View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7612_low_3 (Length: 209)
Name: NF7612_low_3
Description: NF7612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7612_low_3 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 38608311 - 38608519
Alignment:
| Q |
1 |
tccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608311 |
tccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataac |
38608410 |
T |
|
| Q |
101 |
cgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608411 |
cgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaac |
38608510 |
T |
|
| Q |
201 |
ggaatggtt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
38608511 |
ggaatggtt |
38608519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 38793094 - 38793302
Alignment:
| Q |
1 |
tccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793094 |
tccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataac |
38793193 |
T |
|
| Q |
101 |
cgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793194 |
cgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaac |
38793293 |
T |
|
| Q |
201 |
ggaatggtt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
38793294 |
ggaatggtt |
38793302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 38121810 - 38121604
Alignment:
| Q |
3 |
cgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccg |
102 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |||||| |
|
|
| T |
38121810 |
cgtgaacacatagttccaggtatattcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccg |
38121711 |
T |
|
| Q |
103 |
tcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacgg |
202 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38121710 |
tcacttccgagtcgattcatcagaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacgg |
38121611 |
T |
|
| Q |
203 |
aatggtt |
209 |
Q |
| |
|
||||||| |
|
|
| T |
38121610 |
aatggtt |
38121604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28731386 - 28731178
Alignment:
| Q |
1 |
tccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
28731386 |
tccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaac |
28731287 |
T |
|
| Q |
101 |
cgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaac |
200 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
28731286 |
tgtcacttccgagtcgattcatccgaacagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaac |
28731187 |
T |
|
| Q |
201 |
ggaatggtt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
28731186 |
ggaatggtt |
28731178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34875880 - 34876008
Alignment:
| Q |
1 |
tccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
34875880 |
tccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaac |
34875979 |
T |
|
| Q |
101 |
cgtcacttccgattcgattcattcgaaca |
129 |
Q |
| |
|
| |||||||||| ||||||||| |||||| |
|
|
| T |
34875980 |
catcacttccgagtcgattcatccgaaca |
34876008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 31529340 - 31529212
Alignment:
| Q |
1 |
tccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |||| |
|
|
| T |
31529340 |
tccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaac |
31529241 |
T |
|
| Q |
101 |
cgtcacttccgattcgattcattcgaaca |
129 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |
|
|
| T |
31529240 |
cgtcacttccgagtcgattcatccgaaca |
31529212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 51801408 - 51801280
Alignment:
| Q |
1 |
tccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataac |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||| | || | || ||| |||||||||||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
51801408 |
tccgtgaacacatcgttccagatatattcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaat |
51801309 |
T |
|
| Q |
101 |
cgtcacttccgattcgattcattcgaaca |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
51801308 |
cgtcacttccgattcgattcatccgaaca |
51801280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University