View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7612_low_7 (Length: 202)
Name: NF7612_low_7
Description: NF7612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7612_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 13726980 - 13727115
Alignment:
| Q |
49 |
caccaacatcgagcatttcaatagaaggaagaacaacaatgccaacttggggaaannnnnnn-atattgtagcaaaagatgttcaatacaaggaggataa |
147 |
Q |
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| T |
13726980 |
caccaacatcgagcatttcaatagaaggaaggacaacaatgccaacttggggaaactttttttatattgtagcaaaagatgttcaatacaaggaggataa |
13727079 |
T |
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| Q |
148 |
ttctcaaaaa-tatggggacaagaccaagaacaggt |
182 |
Q |
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| T |
13727080 |
ttctcaaaaattacggtgacaagaccaagaacaggt |
13727115 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 49525056 - 49525106
Alignment:
| Q |
130 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacag |
180 |
Q |
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| T |
49525056 |
tcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacag |
49525106 |
T |
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