View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7613_low_1 (Length: 254)
Name: NF7613_low_1
Description: NF7613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7613_low_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 9452619 - 9452864
Alignment:
| Q |
9 |
gaagaatatagtagaacttacttcactctgggtattagcacaaaaggcacagtcttcatgcaaacatttcatgcaattccacgacgagaaattaggggct |
108 |
Q |
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| T |
9452619 |
gaagaatatagtagaacttacttcactttgggtattagcacaaaaggcacagtcttcatgcaaacatttcatgcaattccacgacgagaaattaggggcc |
9452718 |
T |
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| Q |
109 |
gttgcataagccttgcatgtagagttcccaccaaaactaagggaatcatgtttactgattgcaggtgcatggtgagatgctatgttgaatgtaacactta |
208 |
Q |
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| T |
9452719 |
gttgcataagcattgcatgtagagttcccaccaaaactaagggaatcatgtttactgattgcaggtgcatggtgagatgctatgttgaatgtaacactta |
9452818 |
T |
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| Q |
209 |
acattacaagtgaaacacagataccaatcaaggagattagcatcaa |
254 |
Q |
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| T |
9452819 |
acattacaagtgaaacacagataccaatcaaggagattagcatcaa |
9452864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 9441401 - 9441633
Alignment:
| Q |
22 |
gaacttacttcactctgggtattagcacaaaaggcacagtcttcatgcaaacatttcatgcaattccacgacgagaaattaggggctgttgcataagcct |
121 |
Q |
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| T |
9441401 |
gaacttacttcattctggctattggcacaaaatgcacaatcttcatgcaaacattgcatacaattccacgacaagtgatttggggccgttgtataagcct |
9441500 |
T |
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| Q |
122 |
tgcatgtagagttcccaccaaaactaagggaatcatgtttactgattgcaggtgcatggtgagatgctatgttgaatgtaacacttaacattacaagtga |
221 |
Q |
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| T |
9441501 |
tgcatgtagagttcccaccaaagctaagtgaatcttgtatactgagtgaaggtgcatggtgagctgcctggttgaatgtaacgcttaatgttacaagtga |
9441600 |
T |
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| Q |
222 |
aacacagataccaatcaaggagattagcatcaa |
254 |
Q |
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| T |
9441601 |
aacaaagataccaatcaaggagataagcatcaa |
9441633 |
T |
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