View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7614_low_2 (Length: 456)
Name: NF7614_low_2
Description: NF7614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7614_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 12344261 - 12343978
Alignment:
| Q |
1 |
ggctggtggtgttgaaagagtggttggggatgggggtgttgaaagtaattattttgatgaaaagattgataagggttgtttgcattattatttccactat |
100 |
Q |
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| T |
12344261 |
ggctggtggtgttgaaagagtggttggggatgggggtgttgaaagtaattattttgatgaaaagattgataagggttgtttgcattattatttccactat |
12344162 |
T |
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| Q |
101 |
tttggaagtgatgatgatgaatgaggttatttgaagtgttgttgtttgaatccaaaggctttgttggatttgaaagagagaggtcaaaagagtaattatc |
200 |
Q |
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| T |
12344161 |
tttggaagtgatgatgatgaatgaggttatttgaagtgttgttgtttgaatctaaaggctttgttggatttgaaagagagaggtcaaaagagtaattatc |
12344062 |
T |
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| Q |
201 |
agttttagaagaagccattgatgatgataaagagtttcttgaatccaaagctcttttccaaaaccccaaatccatttcatcttc |
284 |
Q |
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| T |
12344061 |
agttttagaagaagccattgatgatgataaagagtttcttgaatccaaagctcttttccaaaaccccaaatccatttcttcttc |
12343978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 335 - 439
Target Start/End: Complemental strand, 12343927 - 12343823
Alignment:
| Q |
335 |
gaggactaatttgcaaagacaaatctggttgtgctggaaataactccatcttttgctatctacaccttcaccaaaacaattagtgttttgtttttggctt |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12343927 |
gaggactaatttgcaaagacaaatctggttgtgctggaaataactccatcttttgctatctacaccttcaccaaaacaattagtgttttgtttttggctt |
12343828 |
T |
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| Q |
435 |
gaaat |
439 |
Q |
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||||| |
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| T |
12343827 |
gaaat |
12343823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 27569273 - 27569319
Alignment:
| Q |
338 |
gactaatttgcaaagacaaatctggttgtgctggaaataactccatc |
384 |
Q |
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||||||||||||| || ||||||||||||||||| |||| ||||||| |
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| T |
27569273 |
gactaatttgcaatgataaatctggttgtgctgggaatagctccatc |
27569319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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