View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7614_low_4 (Length: 268)
Name: NF7614_low_4
Description: NF7614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7614_low_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 29473376 - 29473098
Alignment:
| Q |
1 |
ttttttatgaacagttactatatcat--gtgtttgactaaatggtgtgtgtggaatgnnnnnnnngagaataaggacgtgtggatttgttaggatcatca |
98 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29473376 |
ttttttatgaacagttactatatcatatgtgtttgactaaatggtgtgtgtggaatgaaaaaaa-gagaataaggacgtgtggatttgttaggatcatca |
29473278 |
T |
|
| Q |
99 |
caattctccgccattgttgctgagcctaccattatgggaattgaattttggttgagtcattgatgtaatcatttccaata----------tgaaactatg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29473277 |
caattctccgccattgttgctgagcctaccattatgggaatttaattttggttgggtcattgatgtaatcatttccaatatgaatgaatatgaaactatg |
29473178 |
T |
|
| Q |
189 |
tgaaagttagtgtcatagtgcctaaattcagctcaattctatacagtcctattttctccaccgccactcattcaatcact |
268 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29473177 |
tgaaagttagtgccatagtgcctaaattcagctcaattctatacagtactattttctccaccgccactcattcaatcact |
29473098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University