View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_high_12 (Length: 271)
Name: NF7615_high_12
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 8294387 - 8294186
Alignment:
| Q |
49 |
aactagtggcaattcaggtaaatgcatggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatcta |
148 |
Q |
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| T |
8294387 |
aactagtggcaattcaggtaaatgcatggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatcta |
8294288 |
T |
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| Q |
149 |
aggcaatctttaaggggaaaacgcttcataatcaattccaacacatcaacaggtagatttatcaatgtgttgnnnnnnnccatctcatccgttttcattt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8294287 |
aggcaatctttaaggggaaaacgcttcataatcaattccaacacatcaacaggtagatttatcaatgtgttgtttttttccatctcatccgttttcattt |
8294188 |
T |
|
| Q |
249 |
ca |
250 |
Q |
| |
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|| |
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|
| T |
8294187 |
ca |
8294186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 30148855 - 30148693
Alignment:
| Q |
49 |
aactagtggcaattcaggtaaatgcatggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatcta |
148 |
Q |
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||||| ||||| ||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||||| || |||| | ||||| | |
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| T |
30148855 |
aactaatggcagttcaggtaa----atggcagcaacgcttgttttcaatgaaattagaaa--ctgttttcctacaagaacgacaggttgcccttaatcca |
30148762 |
T |
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| Q |
149 |
aggcaatctttaaggggaaaacgcttc---ataatcaattccaacacatcaacaggtagatttatcaat |
214 |
Q |
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| T |
30148761 |
agccaatctttaaggggcaagcggttcagaatcatcaattccaacacatcgaccggtagatttgtcaat |
30148693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 30153551 - 30153414
Alignment:
| Q |
78 |
cagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatctaaggcaatctttaaggggaaaacgcttc-- |
175 |
Q |
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|||||| ||||||||||||||| |||||||| ||| ||||||||||||||| || |||| | ||||| ||| |||||||||||||| || || ||| |
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| T |
30153551 |
cagcaacgcttgttttcaatgaaattagaaactgt--tttcctacaagaacgacaggttgcccttaatccaagccaatctttaaggggcaagcggttcag |
30153454 |
T |
|
| Q |
176 |
-ataatcaattccaacacatcaacaggtagatttatcaat |
214 |
Q |
| |
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| T |
30153453 |
aatcatcaattccaacacatcgaccggtagatttgtcaat |
30153414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 25741348 - 25741476
Alignment:
| Q |
76 |
ggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatctaaggcaatctttaaggggaaaacgcttc |
175 |
Q |
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|||||||||| ||||||||||||| ||| |||| | | |||||||||||||||||| ||||||| ||||||||| |||||||||| || ||||||||| |
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| T |
25741348 |
ggcagcaatgtttgttttcaatgatattcgaaactat--tttcctacaagaacggcaaattgctctcaatctaaggtaatctttaagaggcaaacgcttc |
25741445 |
T |
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| Q |
176 |
ataatcaattccaacacatcaacaggtagat |
206 |
Q |
| |
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| T |
25741446 |
ataatcaattccaacacatcaacgggtagat |
25741476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 25756086 - 25756222
Alignment:
| Q |
76 |
ggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatctaaggcaatctttaaggggaaaacgcttc |
175 |
Q |
| |
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|||||||||||||||||||||||| ||| |||| ||| || || |||||||||||| ||||||| ||||||||| |||||||||| || ||||||||| |
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| T |
25756086 |
ggcagcaatgcttgttttcaatgatattggaaactgt--ttcccgacaagaacggcaaattgctctcaatctaaggtaatctttaagaggcaaacgcttc |
25756183 |
T |
|
| Q |
176 |
ataatcaattccaacacatcaacaggtagatttatcaat |
214 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||| |
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| T |
25756184 |
ataatcatttccaacacatcaactggtagatttgtcaat |
25756222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 40462656 - 40462819
Alignment:
| Q |
49 |
aactagtggcaattcaggtaaatgcatggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatcta |
148 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||| |||||||| |||||||| |||||||||| ||| | | |
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| T |
40462656 |
aactagtggcagttcaggtaaatg----gcagtaatgtttgttttcaatgacattagaaa--cagttttcctgcaagaacgacatattgctcttaaacca |
40462749 |
T |
|
| Q |
149 |
aggcaatctttaaggggaaaacgcttcataatcaattccaacacatcaacaggtagatttatcaatgtgt |
218 |
Q |
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| T |
40462750 |
aggcaatctctaaggggcaaacgcttcagaatcaactcaaacacatcgactggtagatttgtcaatgtgt |
40462819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 25733647 - 25733775
Alignment:
| Q |
76 |
ggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatctaaggcaatctttaaggggaaaacgcttc |
175 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| | | |||||||||||||||||| ||||||| ||||||||| ||||||| ||||| ||||||||| |
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| T |
25733647 |
ggcagcaatgcttgttttcaatgatattcgaaactat--tttcctacaagaacggcaaattgctctcaatctaaggtaatcttttaggggcaaacgcttc |
25733744 |
T |
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| Q |
176 |
ataatcaattccaacacatcaacaggtagat |
206 |
Q |
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||||||| ||||||||||||| | ||||||| |
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| T |
25733745 |
ataatcagttccaacacatcagcgggtagat |
25733775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 25747518 - 25747654
Alignment:
| Q |
76 |
ggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatctaaggcaatctttaaggggaaaacgcttc |
175 |
Q |
| |
|
|||||||||||||||||||||| | || |||| || |||||||||||||||||| ||||||| ||||||||| |||||||||| || ||||||||| |
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| T |
25747518 |
ggcagcaatgcttgttttcaatcattttggaaaccgt--tttcctacaagaacggcaaattgctctcaatctaaggtaatctttaagaggcaaacgcttc |
25747615 |
T |
|
| Q |
176 |
ataatcaattccaacacatcaacaggtagatttatcaat |
214 |
Q |
| |
|
||||||| ||||||||||| || ||||||||| ||||| |
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|
| T |
25747616 |
ataatcatctccaacacatcgactggtagatttgtcaat |
25747654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 25764042 - 25764180
Alignment:
| Q |
79 |
agcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatctaaggcaatctttaaggggaaaacgcttcata |
178 |
Q |
| |
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||||||||||||||||||||| ||| |||| ||| || || ||||||||| || || |||| ||||||||| |||||||||| || |||||||||||| |
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| T |
25764042 |
agcaatgcttgttttcaatgatattggaaactgt--ttcccgacaagaacgacaaatcgctctcaatctaaggtaatctttaagaggcaaacgcttcata |
25764139 |
T |
|
| Q |
179 |
atcaattccaacacatcaacaggtagatttatcaatgtgtt |
219 |
Q |
| |
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||| ||||||||||||||| ||||||||| ||||| |||| |
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|
| T |
25764140 |
atccgttccaacacatcaactggtagatttgtcaatatgtt |
25764180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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