View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7615_high_3 (Length: 672)

Name: NF7615_high_3
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7615_high_3
NF7615_high_3
[»] chr1 (1 HSPs)
chr1 (11-672)||(8293547-8294213)


Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 11 - 672
Target Start/End: Original strand, 8293547 - 8294213
Alignment:
Q  11 gaacctgtggagctgcttacaattgattgaaactggtaaatcttatgtgtccatttattttt-ctcttctcttccgtgttaatttctctgattccagata 109  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8293547 gaacctgtggagctgcttacaattgactgaaactggtaaatcttatgtgtccatttattttttctcttctcttccgtgttaatttctctgattccagata 8293646  T
Q  110 ttttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtttaggtgctannnnnnnaataacaaat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  8293647 ttttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtttaggtgctatttttttaataacaaat 8293746  T
Q  210 gtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctgcaatgtacacgtttctgttgttttt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8293747 gtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctgcaatgtacacgtttctgttgttttt 8293846  T
Q  310 atatagttatgagttactgctattagttttatgtgtgtaatatgaatatcccttccacatcatattggagctctgatcagtgatgatgttatttttcgag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||      
T  8293847 atatagttatgagttactgctattagttttatgtgtgtaatatgaatatcccttccacatcatattggagctctgatcagtgacgatgttattttccgca 8293946  T
Q  410 ctttctccgtcttagtcttctgagcagtatttttattactaatatttgcaagggacaagtattctgcagtggttcagtg-nnnnnnntaaatacaagtat 508  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  8293947 ctttcttcgtcatagtcttctgagcagtatttttattactaatatttgcaagggacaagtattctgcagtggttcagtgaaaaaaaataaatacaagtat 8294046  T
Q  509 actagttggaattcc---nnnnnnnnatatagtgatgtcaagatactttagtgatccttttacatcataatcaaaagaaacttatacttattttaataca 605  Q
    |||||||||||||||           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8294047 actagttggaattcctttttttttttatatagtgatgtcaagacactttagtgatccttttacatcaaaatcaaaagaaacttatacttattttaataca 8294146  T
Q  606 ctagtgtttgcaacttgcaatgattctgcagtggctcgttgaaatgaaaacggatgagatgggaaaa 672  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8294147 ctaatgtttgcaacttgcaatgattctgcagtggctcgttgaaatgaaaacggatgagatggaaaaa 8294213  T

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