View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_high_5 (Length: 440)
Name: NF7615_high_5
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 9942756 - 9942404
Alignment:
| Q |
18 |
gggggatattacaccatgagctaaataagactaagagagatagttttgatcaataacttgcagtacaagttatctgaatgtaggacaataagtgtagtac |
117 |
Q |
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| T |
9942756 |
gggggatattacaccatgagctaaataagactaagagagatagttttgatcaataacttgcagtacaagttatctgaatgtaggacaataagtgtagtac |
9942657 |
T |
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| Q |
118 |
aatgtagcttagcagtaccataacaatgtgtgtatatatatcaattgtacttcagatttaaacattgaataagatgaatacacttttccctcatttcata |
217 |
Q |
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| T |
9942656 |
aatgtagcttagcagtaccataacaatgtgtgtgtatatgtcaattgtacttcagatttaaacattgaataagatgaatacacttttccctcatttcata |
9942557 |
T |
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| Q |
218 |
ttactttactttgtgagttgttgcactatcaacaaaggttgtcttgttagcttggtgttttagtaactacactttactgtcatttacattagacaagaaa |
317 |
Q |
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| T |
9942556 |
ttactttactttgtgagttgttgcactatcaacaaaggttgtcttgttagcttggtgttttaataactacactttactgtcatttacattagacaagaaa |
9942457 |
T |
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| Q |
318 |
atatatagctgcaataacttagtaagtacttgattgaactatactaattcaat |
370 |
Q |
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| T |
9942456 |
atatatagctgcaaaaacttagtaagtacttgattgaactatactaattcaat |
9942404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 375 - 437
Target Start/End: Complemental strand, 9942420 - 9942358
Alignment:
| Q |
375 |
aactatactaattcaatagcttatgaaatatatctccaatgaatttcataatctagtatatct |
437 |
Q |
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| T |
9942420 |
aactatactaattcaatagcttatgaaatatatctccaatgaatttcataatctagtatatct |
9942358 |
T |
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