View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7615_high_9 (Length: 364)
Name: NF7615_high_9
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 8692493 - 8692820
Alignment:
| Q |
19 |
caaattcctttagagacaattgtaaaatggtcattatatgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8692493 |
caaattcctttagagacaattgtaaaatggtcattacatgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttag |
8692592 |
T |
|
| Q |
119 |
ttttctgtaaagacaaatgtgatggcattcatcaaatctttgattgtcacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8692593 |
ttttctgtaaagacaaatgtgatggcattca---aatctttgattgtcacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattaga |
8692689 |
T |
|
| Q |
219 |
acaattctatcaagatgaagtttctttcattgtaagttgcatcattgtaaggccatgtgatttttatctgtgtgtatttgatcatcatgatgaaattatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8692690 |
acaattctatcaagatgaagtttctttcattgtaagttgcatcattgtaaggccatgtgattttcatctgtgtgtatttgatcatcatgatgaaattatt |
8692789 |
T |
|
| Q |
319 |
taaacataaaagtgtcttgaagcagccatat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8692790 |
taaacataaaagtgtcttgaagcagccatat |
8692820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 14383277 - 14383187
Alignment:
| Q |
51 |
attatatgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttagttttctgtaaagacaaatgtgat |
141 |
Q |
| |
|
|||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
14383277 |
attacatgcttaatgtgatgcaatctgcagactgagaaggaatttgtccttccatctcaccacattagttttctgtaaagacaaatgtgat |
14383187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 8707631 - 8707778
Alignment:
| Q |
166 |
cacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaacaattctatcaagatgaagtttctttcattgtaagttgcatcattg |
265 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||||||| |||||| |||||| ||| |||||| ||| ||| ||||| ||||||||||||||||| |
|
|
| T |
8707631 |
cacaatgtgaatattgaaggtaaataaattt-attttgtttgatgaatttagaatgtctctttcaagacgaactttgtttcactgtaagttgcatcattg |
8707729 |
T |
|
| Q |
266 |
taaggccatgtgatttttatctgtgtgtatttgatcatcatgatgaaatt |
315 |
Q |
| |
|
|||||||||||||||| ||||| |||||| | ||||||||||||||||| |
|
|
| T |
8707730 |
taaggccatgtgatttctatct-agtgtatctcatcatcatgatgaaatt |
8707778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 8699309 - 8699359
Alignment:
| Q |
91 |
aatttgtccttccatctcatcactttagttttctgtaaagacaaatgtgat |
141 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
8699309 |
aatttgtccttccatctcaccactttagttttctgtaaagacaattgtgat |
8699359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University