View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_low_10 (Length: 364)
Name: NF7615_low_10
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 8692493 - 8692820
Alignment:
| Q |
19 |
caaattcctttagagacaattgtaaaatggtcattatatgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttag |
118 |
Q |
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| T |
8692493 |
caaattcctttagagacaattgtaaaatggtcattacatgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttag |
8692592 |
T |
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| Q |
119 |
ttttctgtaaagacaaatgtgatggcattcatcaaatctttgattgtcacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattaga |
218 |
Q |
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| T |
8692593 |
ttttctgtaaagacaaatgtgatggcattca---aatctttgattgtcacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattaga |
8692689 |
T |
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| Q |
219 |
acaattctatcaagatgaagtttctttcattgtaagttgcatcattgtaaggccatgtgatttttatctgtgtgtatttgatcatcatgatgaaattatt |
318 |
Q |
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| T |
8692690 |
acaattctatcaagatgaagtttctttcattgtaagttgcatcattgtaaggccatgtgattttcatctgtgtgtatttgatcatcatgatgaaattatt |
8692789 |
T |
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| Q |
319 |
taaacataaaagtgtcttgaagcagccatat |
349 |
Q |
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| T |
8692790 |
taaacataaaagtgtcttgaagcagccatat |
8692820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 14383277 - 14383187
Alignment:
| Q |
51 |
attatatgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttagttttctgtaaagacaaatgtgat |
141 |
Q |
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| T |
14383277 |
attacatgcttaatgtgatgcaatctgcagactgagaaggaatttgtccttccatctcaccacattagttttctgtaaagacaaatgtgat |
14383187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 8707631 - 8707778
Alignment:
| Q |
166 |
cacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaacaattctatcaagatgaagtttctttcattgtaagttgcatcattg |
265 |
Q |
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| T |
8707631 |
cacaatgtgaatattgaaggtaaataaattt-attttgtttgatgaatttagaatgtctctttcaagacgaactttgtttcactgtaagttgcatcattg |
8707729 |
T |
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| Q |
266 |
taaggccatgtgatttttatctgtgtgtatttgatcatcatgatgaaatt |
315 |
Q |
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| T |
8707730 |
taaggccatgtgatttctatct-agtgtatctcatcatcatgatgaaatt |
8707778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 8699309 - 8699359
Alignment:
| Q |
91 |
aatttgtccttccatctcatcactttagttttctgtaaagacaaatgtgat |
141 |
Q |
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| T |
8699309 |
aatttgtccttccatctcaccactttagttttctgtaaagacaattgtgat |
8699359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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