View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_low_11 (Length: 359)
Name: NF7615_low_11
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 6854307 - 6854129
Alignment:
| Q |
20 |
aggcacactattcagcattagaacaaactaatccttaggaaacaatagaagatatttcaagattagaaactattcttcttagataagctatgataatgtc |
119 |
Q |
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|||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
6854307 |
aggcacactactgggcattagaataaactaatccttaggaaacaatcaaagatatttcaagattagaaactattcttattagataagctatgataacgtc |
6854208 |
T |
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| Q |
120 |
aagatattctaagatactttcttatac--tgtaacaattatttctatcacctttatgcatttttatttggtattgattg |
196 |
Q |
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|||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854207 |
aagatattctaatatactttcttataccattcaacaattatttctatcacctttatgcatttttatttggtattgattg |
6854129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 6854046 - 6853927
Alignment:
| Q |
196 |
gagttaataaccaagtgttgtgaatcattat---ttttattaggtttctgctgctgagttaaattccagccccactaataaggctatataggcatctagt |
292 |
Q |
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||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| | |
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| T |
6854046 |
gagttaataacgaagtgttgtgaatcatgataaatgttattaggtttctgctgctgagttaaacttcagccccactaataaggctatataggcaactaat |
6853947 |
T |
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| Q |
293 |
tcaaaaataatgttgttttc |
312 |
Q |
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||||||||||| |||||||| |
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| T |
6853946 |
tcaaaaataatattgttttc |
6853927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 6824257 - 6824294
Alignment:
| Q |
275 |
gctatataggcatctagttcaaaaataatgttgttttc |
312 |
Q |
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| T |
6824257 |
gctacataggcatctagttcaaaaataatgttgttttc |
6824294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 33719995 - 33720025
Alignment:
| Q |
313 |
tattgaaaaaggctgtatattttactgatgt |
343 |
Q |
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| T |
33719995 |
tattgaaaaaggctgtatattttactgatgt |
33720025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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