View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_low_13 (Length: 311)
Name: NF7615_low_13
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 43021294 - 43021002
Alignment:
| Q |
1 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
100 |
Q |
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| T |
43021294 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
43021195 |
T |
|
| Q |
101 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagt |
200 |
Q |
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| T |
43021194 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagt |
43021095 |
T |
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| Q |
201 |
gcttaagactcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggt |
293 |
Q |
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| T |
43021094 |
gcttaagactcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggt |
43021002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 35059992 - 35059698
Alignment:
| Q |
1 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
35059992 |
aatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacaca--gacattttttcatatcattaactacttac |
35059895 |
T |
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| Q |
101 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgt-gaactatgcag |
199 |
Q |
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| T |
35059894 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgcatgtggaactatgcag |
35059795 |
T |
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| Q |
200 |
tgcttaagactcatccgagt---ttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggt |
293 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||| |
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| T |
35059794 |
tgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaagatcgagaatttggt |
35059698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 42810459 - 42810180
Alignment:
| Q |
9 |
ttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttacctattgaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||| || |||| |
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| T |
42810459 |
ttgataaagcagaatatgttgtggattttcataaaataattgtaaagcactgctttacacaa-gacatttttccatgtcattaactacttacatagtgaa |
42810361 |
T |
|
| Q |
109 |
tatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagtgcttaaga |
208 |
Q |
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| ||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||| ||||||||||| |
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| T |
42810360 |
tttagtttccaacttttatgattggcagagtaacatattgtaaaaggatgata-atgttatcactattctttttgcatttgaactatggagtgcttaaga |
42810262 |
T |
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| Q |
209 |
ctcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggt |
293 |
Q |
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||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42810261 |
gtcatcgaagttt---gtcttattgcttttaatgagtttaattctttcatggaacagggacttatccaaagatcgagaatttggt |
42810180 |
T |
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