View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_low_17 (Length: 257)
Name: NF7615_low_17
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 14097803 - 14097700
Alignment:
| Q |
135 |
taaaaatttactaacttagtttcaaattttgcctactcctaattcttactcaaggtttgggtgtgattaaggtataaattttacaactcctacccggtca |
234 |
Q |
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| T |
14097803 |
taaaaatttaccaacttagtttcaaattttgcctacccctaattcttactcaaggtttgggtgtgattaaggtataaattttacaactcctatccggtca |
14097704 |
T |
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| Q |
235 |
tttt |
238 |
Q |
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|||| |
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| T |
14097703 |
tttt |
14097700 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14099965 - 14099921
Alignment:
| Q |
1 |
tatattataagcaaagttttaagaaacatagcaccaagacatgtc |
45 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14099965 |
tatattataagcaaagttttaagaaacatagcatcaagacatgtc |
14099921 |
T |
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