View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_low_18 (Length: 250)
Name: NF7615_low_18
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9942296 - 9942059
Alignment:
| Q |
1 |
ctcaaaattgatgatagtgggtttttgaattgagtgattggcctctggtagtgggtttttacaaaatctgtactatgtattgcatattgtggtctgaaaa |
100 |
Q |
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| T |
9942296 |
ctcaaaattgatgatagtgggtttttgaattgagtgattggcctctggtagtgggtttttgcaaaatctgtactatgtattgcatattgtggtctgtaaa |
9942197 |
T |
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| Q |
101 |
tattttgacatttacggctgcatttgctttattctgtaattttgctcaaaatctagagtttgtaaactgatgcaagtttaggaattgagtttgtagaacc |
200 |
Q |
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| T |
9942196 |
tattttgacatttacggctgcatttgctttattctgtaattttgctcaaaatctagaggttgtaaactgatgcaagtttaggaattgagtttgtagaacc |
9942097 |
T |
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| Q |
201 |
tagaaatggaaaaggtgagacggtagtggatggatatt |
238 |
Q |
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| T |
9942096 |
tagaaatggaaaaggtgagacggtagtggatggatatt |
9942059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 9335597 - 9335519
Alignment:
| Q |
121 |
catttgctttattctgtaattttgctcaaaatctagagtttgtaaactgatgcaagtttaggaattgagtttgtagaac |
199 |
Q |
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| T |
9335597 |
catttgatttattttctaatattgttcaaaatctatagtttgtgaactgacgtgagtttaggaattgagtttatagaac |
9335519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 42364234 - 42364073
Alignment:
| Q |
25 |
ttgaattgagtgattggcctctggtagtgggtttttacaaaatctgtactatgtattgcatattgtggtctgaaaatattttgacatttacggctgcatt |
124 |
Q |
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| T |
42364234 |
ttgaattgagtgattggtctctggtaactggtttttgcaaaatctgtaacttgtatttcatatcccatagtgaaaatattttgacgtttactggtgcatt |
42364135 |
T |
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| Q |
125 |
tgctttattctgtaattttgctcaaaatctagagtttgtaaactgatgcaagtttaggaatt |
186 |
Q |
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| T |
42364134 |
tgatttattttgtaattttgttcaaaatctagagtgtttaaactgatgcgagtttaggaatt |
42364073 |
T |
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