View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_low_19 (Length: 237)
Name: NF7615_low_19
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_19 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 7582929 - 7583165
Alignment:
| Q |
1 |
tgtctccaatctctaactctactgggttaccgaaattggaaggagttaccaaatgaacccttcaacctagttttggagcatctgaatatcgctttttgcg |
100 |
Q |
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| T |
7582929 |
tgtctccaatctctaactctactgggttaccgaaatttgaaggagttaccaaatgaacccttcaacctagttttggagcatctgaatatcgctttttgcg |
7583028 |
T |
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| Q |
101 |
atgagcttgagtatttaccagagaaaatatggggaggtttgcaatcactacaatccatgaggatttattgctgtaaaagattaaaatgcttgccagatgg |
200 |
Q |
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| T |
7583029 |
atgagcttgagtatttaccagagaaaatatggggaggtttgcaatcactacaatccatgaggatttattgttgtaaaaaattaaaatgcttgccagatgg |
7583128 |
T |
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| Q |
201 |
tattagacacctcactgcacttgatttgttgaatatt |
237 |
Q |
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| T |
7583129 |
tattagacacctcactgcacttgatttgttgaatatt |
7583165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 33 - 237
Target Start/End: Complemental strand, 7098285 - 7098081
Alignment:
| Q |
33 |
aaattggaaggagttaccaaatgaacccttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagtatttaccagagaaaatatgg |
132 |
Q |
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| T |
7098285 |
aaatttgaaggagttaccaaatgaacgcttcaacctagctttggagcatctgcaaatctcttgttgctgtgagcttgagtatttaccagagaaaatatgg |
7098186 |
T |
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| Q |
133 |
ggaggtttgcaatcactacaatccatgaggatttattgctgtaaaagattaaaatgcttgccagatggtattagacacctcactgcacttgatttgttga |
232 |
Q |
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| T |
7098185 |
ggaggtctgcaatcacttcaatctatgaggatttcttattgtgaaagattaaaatgcttgccagatggtattagacacctcaccgcacttgattcgttga |
7098086 |
T |
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| Q |
233 |
atatt |
237 |
Q |
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|||| |
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| T |
7098085 |
ctatt |
7098081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 226
Target Start/End: Complemental strand, 17981806 - 17981620
Alignment:
| Q |
40 |
aaggagttaccaaatgaacccttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagtatttaccagagaaaatatggggaggtt |
139 |
Q |
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| T |
17981806 |
aaggagttaccaaatgaacccttcaacctagctttgaagcatctggatatcaatttgtgcagcgagcttgagtatttaccagagaaaatatggggaggtc |
17981707 |
T |
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| Q |
140 |
tgcaatcactacaatccatgaggatttattgctgtaaaagattaaaatgcttgccagatggtattagacacctcactgcacttgatt |
226 |
Q |
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| T |
17981706 |
tgcaatcacttcaatctatggtgattgttgattgtaggaaattgaaatgcttgccggacggtattagacaccttactgcacttgatt |
17981620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 30203028 - 30202825
Alignment:
| Q |
25 |
ggttaccgaaattggaaggagttaccaaatgaacccttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagtatttaccagaga |
124 |
Q |
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|||| |||||| | ||| |||||||||||||||||||||| |||| |||||||||||| |||||| ||| |||| ||||||||| |||||||||| |
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| T |
30203028 |
ggtttccgaaaattgaaagagttaccaaatgaacccttcagtctagctttggagcatctaaatatctcttgttgcagcgagcttgagcctttaccagagg |
30202929 |
T |
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| Q |
125 |
aaatatggggaggtttgcaatcactacaatccatgaggatttattgctgtaaaagattaaaatgcttgccagatggtattagacacctcactgcacttga |
224 |
Q |
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| T |
30202928 |
aaatttggggaggtctacaatccctacgaaaaataacaattggtggttgtgaaagattaaaatgcttgctagaaggtattagacacctcacttcacttga |
30202829 |
T |
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| Q |
225 |
tttg |
228 |
Q |
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|||| |
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| T |
30202828 |
tttg |
30202825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 30205374 - 30205267
Alignment:
| Q |
39 |
gaaggagttaccaaatgaacccttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagtatttaccagagaaaatatggggaggt |
138 |
Q |
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| T |
30205374 |
gaaggagttaccaaatgaaccatttagcctagttatggagcatctgataatctcttcatgtgatgagcttgagtctttaccaaaggaaatttgggaaggt |
30205275 |
T |
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| Q |
139 |
ttgcaatc |
146 |
Q |
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||||||| |
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| T |
30205274 |
ctgcaatc |
30205267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 30474231 - 30474166
Alignment:
| Q |
47 |
taccaaatgaacccttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagt |
112 |
Q |
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| T |
30474231 |
taccaaatgaacccttcaacctagtgttggagtgtctgagtatctcttcttgtggtgagcttgagt |
30474166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 13615703 - 13615527
Alignment:
| Q |
61 |
ttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagtatttaccagagaaaatatggggaggtttgcaatcactacaatccatga |
160 |
Q |
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|||||| ||| |||||||||||| |||||| ||||| | || ||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||| |
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| T |
13615703 |
ttcaacttagctttggagcatcttaatatccggatttgccacgaacttgagtatttaccagagaaattatggggaggtcggcaatcacttcaatctatgg |
13615604 |
T |
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| Q |
161 |
ggatttattgctgtaaaagattaaaatgcttgccagatggtattagacacctcactgcacttgatttgttgaatatt |
237 |
Q |
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| T |
13615603 |
tgattaatcattgtcgtaaattaaaatgcctgtcggacggtattagacacctcattgcacttgattcgttgaatatt |
13615527 |
T |
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