View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7615_low_4 (Length: 572)
Name: NF7615_low_4
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Original strand, 5525216 - 5525761
Alignment:
| Q |
18 |
cttaaactcacttcgtctgagtttgacctaactctttccaccacaaaccctaacgagaaaataacattttcttaccaaccaatctccgtttctcttctat |
117 |
Q |
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| T |
5525216 |
cttaaactcacctcctctgaatttgacctaactctttccaccacaaaccctaacgagaaaataacattttcttaccaacccatctcagtttctcttctag |
5525315 |
T |
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| Q |
118 |
ccggtgaactcgacgttggtgacggtgttattccgtcgtttgagcatggaacgaagaatactacaatgttgaaagctttggttgagagaaagagtgtgaa |
217 |
Q |
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| T |
5525316 |
ccggtgaactcgacgttggtgacggtgttattccgtcgtttgagcatggaacgaagaatactacgatgttgaaagctttggttgagagaaagagtgtgaa |
5525415 |
T |
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| Q |
218 |
gaggaagtcattggagttgaagatgaagatggagactaaggtggaggctaagatgtgggttttcaagactccacgtgttggaatcaatgtgctttgtgac |
317 |
Q |
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| T |
5525416 |
gaggaagtcattggagttgaagatgaagatggagactaaggtggaggctaagatgtgggttttcaagactccacatgttggaataaatgtgctttgtgac |
5525515 |
T |
|
| Q |
318 |
ggtatcgatgtcgccggcgagaaagtgacgacggcagatgagaagtgtgcggtggatgtgaggttcaaggtctggaaatggactcttggatgatcgga-t |
416 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5525516 |
ggtatcgatgtcgccggcgagaaagtgacgacggcggatgagaagtgtgcggtggatgtgaggttcaaggtctggaaatggactcttggatgatcggatt |
5525615 |
T |
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| Q |
417 |
tgttatgtagtacgtgtgata--tgtgttgtgttttgtgatgttg-nnnnnnnnnnnnattttcaaagaggcttttattattaatactaattaattttct |
513 |
Q |
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| T |
5525616 |
tgttat---gtacgtgtgctagctatgtgttgttttgtgatgttgtttttgatttttggttttcaaagaggcttttattattaatactaattaattttct |
5525712 |
T |
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| Q |
514 |
tgtccatcattatattatttattgtaattctgatttttatttggtatatt |
563 |
Q |
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| T |
5525713 |
tgtccatcattatattatttattgtaa-tctgatttttatttggtatatt |
5525761 |
T |
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