View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7615_low_6 (Length: 414)
Name: NF7615_low_6
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_6 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 65801 - 65410
Alignment:
| Q |
1 |
cgtggaggatcacacaagtttatggtctggtcattggagactttaggcataacttcaaatgtcgatttatcaaactcttcatttggttcttcaagatcca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
65801 |
cgtggaggatcacacaagtttatagtctggtcattggagactttaggcataacttcaaatttcgatttatcaaactcttcatttggttcttcaagatcca |
65702 |
T |
|
| Q |
101 |
attgatcaagttttatgattgccttctgcaaagcttgaattgcaatatcattatgcttttctgagcgtgaacctctttcagatagttcaagagactcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
65701 |
attgatcaagttttatgattgccttctgcaaagcttgaattgcaatatcatcatgcttttctgagcgtgaacctctttcagatagttcaagagactcaac |
65602 |
T |
|
| Q |
201 |
cataatactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaattcctttacttttttctttcttagcatttatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
65601 |
cataatactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaattcctttacttttttctttcttagcatttatg |
65502 |
T |
|
| Q |
301 |
gtccatcggcttagaacatattgagaagggagagaatagacattttcctttatgaatacatttaatacatgtctacagagaattcccacaaa |
392 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
65501 |
gtccatcggcttagaacatattaagaagggagagaatagacattttcctttatgaatacatttaatacatgtctacagagaattcccacaaa |
65410 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 51167799 - 51167408
Alignment:
| Q |
1 |
cgtggaggatcacacaagtttatggtctggtcattggagactttaggcataacttcaaatgtcgatttatcaaactcttcatttggttcttcaagatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
51167799 |
cgtggaggatcacacaagtttatggtctggtcatcggagactttaggcataacttcaaatgccgatttatcaaacttttcatttggttcttcaagatcca |
51167700 |
T |
|
| Q |
101 |
attgatcaagttttatgattgccttctgcaaagcttgaattgcaatatcattatgcttttctgagcgtgaacctctttcagatagttcaagagactcaac |
200 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51167699 |
attgatcaagttttgtgattgccttttgcaaagcttgaattgcaataccatgatgcttttctgagcgtgaacctctttcagatagttcaagagactcaac |
51167600 |
T |
|
| Q |
201 |
cataatactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaattcctttacttttttctttcttagcatttatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
51167599 |
cataatactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaactcctttacttttttctttcttagcatttatg |
51167500 |
T |
|
| Q |
301 |
gtccatcggcttagaacatattgagaagggagagaatagacattttcctttatgaatacatttaatacatgtctacagagaattcccacaaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
51167499 |
gtccatcggcttagaacatattgagaagggagagaatagacattttcctttatgaatacatttaatacatgtctatagagaattcccacaaa |
51167408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 658 - 264
Alignment:
| Q |
1 |
cgtggaggatcacacaagtttatggtctggtcattggagactttaggcataacttcaaatgtcgatttatcaaactcttcatttggttcttcaagatcca |
100 |
Q |
| |
|
||||| |||||||| || |||||||| ||||| | |||||||||||||||||||||||| | || ||| |||||||||||||||| ||||||| ||||| |
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|
| T |
658 |
cgtggtggatcacataaatttatggtttggtcgtcggagactttaggcataacttcaaacattgaattaacaaactcttcatttggctcttcaatatcca |
559 |
T |
|
| Q |
101 |
attgatcaagttttatgattgccttctgcaaagcttgaattgcaatatcattatgcttttctgagcgtgaacctctttcagatagttcaagagactcaac |
200 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||||||||||| ||| ||| || |||||||||||||||||||| |||||||||||||| |
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|
| T |
558 |
attgatcaagttttgtgatt-ccttccgcaaagcttgaattgcaatatcatgatgttttatcgatcgtgaacctctttcagatagctcaagagactcaac |
460 |
T |
|
| Q |
201 |
cataatactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaattcctttacttttttctttcttagcatttatg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
459 |
cataatactattaaacaatgaagtacttgaagcttggtttctgccttcttcatggtcttcaattgcaagtcctttacttttgtctttcttagcatttatg |
360 |
T |
|
| Q |
301 |
gtccatcggcttagaacatattgagaagggagagaatagacattttcctttatgaatacatttaatacatgtctacagagaattcccacaaattca |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| | ||| |||||||||||| |
|
|
| T |
359 |
gtccatcggcttagaacatattgagaagggagagaataaacattttccttgatgaatacattcaacacatgtctacaaataatacccacaaattca |
264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 99 - 362
Target Start/End: Complemental strand, 48776204 - 48775941
Alignment:
| Q |
99 |
caattgatcaagttttatgattgccttctgcaaagcttgaattgcaatatcattatgcttttctgagcgtgaacctctttcagatagttcaagagactca |
198 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||||||||||||||||| ||| |||| || |||||||||||||||||||| |||||||||||| |
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| T |
48776204 |
caattgatcaagttttgcgatcgccttccgcaaagcttgaattgcaatatcatgatgttttttcgatcgtgaacctctttcagatagctcaagagactca |
48776105 |
T |
|
| Q |
199 |
accataatactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaattcctttacttttttctttcttagcattta |
298 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |||||| ||||| || |||||||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
48776104 |
accataatactattaaacaatgaagtacttgaggctcggtttctaccttcttcaaggtcttcaattgcaagtcctttacttttgtctttcttagcattta |
48776005 |
T |
|
| Q |
299 |
tggtccatcggcttagaacatattgagaagggagagaatagacattttcctttatgaatacatt |
362 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
48776004 |
tggtccatcgacttagaacatattgagaagggagagaataaacatttttcttgatgaatacatt |
48775941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 48776238 - 48776205
Alignment:
| Q |
182 |
atagttcaagagactcaaccataatactattaaa |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
48776238 |
atagctcaagagactcaaccataatactattaaa |
48776205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 19330677 - 19330321
Alignment:
| Q |
21 |
tatggtctggtcattggagactttaggcataacttcaaatgtcgatttatcaaactcttcatttggttcttcaagatccaattgatcaagttttatgatt |
120 |
Q |
| |
|
|||| ||| ||| ||||| |||||||||||||| | ||||||||| ||||||||| |||||||||||||||||| |||||| |||| |||| | ||||| |
|
|
| T |
19330677 |
tatgatctagtcgttggatactttaggcataaccttaaatgtcgaattatcaaacccttcatttggttcttcaatatccaaacgatctagttctgtgatt |
19330578 |
T |
|
| Q |
121 |
gccttctgcaaagcttgaattgcaatatcattatgcttttctgagcgtgaacctctttcagatagttcaagagactcaaccataatactattaaataatg |
220 |
Q |
| |
|
| ||| | |||| ||||||||||||||||| || ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
19330577 |
tctttccgtaaagtttgaattgcaatatcatgatacttttttgatcgcgaacctctttcagataattcaagaaactcaaccataatactattaaacaatg |
19330478 |
T |
|
| Q |
221 |
aagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaattcctttacttttttctttcttagcatttatggtccatcggcttagaacata |
320 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||| | |||| |||| | |||||||||||||| ||||||||| ||| |||||| |
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|
| T |
19330477 |
aagtacttgaagctctgtttctaccttcctcaaggtcttcaattgccactcctcccattttatttttcttagcatttacggtccatcgacttgaaacata |
19330378 |
T |
|
| Q |
321 |
ttgagaagggagagaatagacattttcctttatgaatacatttaatacatgtctaca |
377 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
19330377 |
ttgagaaggaaaagaataaacattttcctttatgaatacatttaacacatttctaca |
19330321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 59 - 383
Target Start/End: Original strand, 44884302 - 44884626
Alignment:
| Q |
59 |
atgtcgatttatcaaactcttcatttggttcttcaagatccaattgatcaagttttatgattgccttctgcaaagcttgaattgcaatatcattatgctt |
158 |
Q |
| |
|
||||||| ||| ||||||| ||||||| ||||||||| || | | ||||||||||| ||||| || |||||| ||||||||||||||||| ||| || |
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|
| T |
44884302 |
atgtcgaattaacaaactcctcatttgattcttcaagctctattagatcaagttttgcaattgcattttgcaaacattgaattgcaatatcatgatgttt |
44884401 |
T |
|
| Q |
159 |
ttctgagcgtgaacctctttcagatagttcaagagactcaaccataatactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtct |
258 |
Q |
| |
|
|| ||| |||||| |||||||||| | |||||||| |||||||| ||||||||| |||||||| || |||||| ||||| ||||| | || ||| |
|
|
| T |
44884402 |
ttttgatcgtgaagctctttcagaaaattcaagaggacgaaccataacactattaaacaatgaagtgctagaagcttcgtttcctccttcttggaattct |
44884501 |
T |
|
| Q |
259 |
tcaattgcaattcctttacttttttctttcttagcatttatggtccatcggcttagaacatattgagaagggagagaatagacattttcctttatgaata |
358 |
Q |
| |
|
||||||| | ||||| | |||||||||||| |||||| ||||||||| ||||||||| || ||||||||| ||| || |||| ||||| ||| | |
|
|
| T |
44884502 |
tcaattgtcaatccttcaaatttttctttcttggcatttcgggtccatcgttgtagaacatactgtgaagggagataatgtacctttttctttaggaaca |
44884601 |
T |
|
| Q |
359 |
catttaatacatgtctacagagaat |
383 |
Q |
| |
|
|| |||| | ||| ||||| ||||| |
|
|
| T |
44884602 |
cagttaagatatgcctacaaagaat |
44884626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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