View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7615_low_7 (Length: 414)
Name: NF7615_low_7
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7615_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 8289950 - 8290314
Alignment:
| Q |
1 |
atttatgtgatttgggtcataagtttactaaccaagaaaaatactactcctaatgcagttacttatgcaacaagtaaaaacgaggnnnnnnnnttaattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8289950 |
atttatgtgatttgggtcataagtttactaaccaagaaaaatactactcctaatgcagttacttatgcaacaagtaaaaacgaggaaaaaaaattaattg |
8290049 |
T |
|
| Q |
101 |
caaacacaaactaactaaaaacttctatttacactaagcaaacttggtttaaattagtaatctcaaccggtttttggtgtgtcatatgcatagttnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8290050 |
caaacacaaactaactaaaaacttctatttacactaaacaaacttggtttgaattagtaatctcaaccggtttttggtgtgtcatatgcatagttaaaaa |
8290149 |
T |
|
| Q |
201 |
nnnnnn-ctaatgtgaaacactcttgcagcataagctaataacaacctatgaacttgttgagacttgagactttttaacatgtccaccttattctatcaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8290150 |
aaaaaaactaatgtgaaacactcttgcagcata------taacaacctatgaacttgttgagacttgagactttttaacatgtccaccttattctatcaa |
8290243 |
T |
|
| Q |
300 |
attttgtccatttcatgcactgcatcagaatcgaatatatatcattttttgggaacagtcgaatatatatat |
371 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8290244 |
attttgtccatttcatgcaatgcatcagaatcgaatatatatca-tttttgggaacagtcgaatatatatat |
8290314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University