View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7615_low_9 (Length: 381)

Name: NF7615_low_9
Description: NF7615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7615_low_9
NF7615_low_9
[»] chr1 (2 HSPs)
chr1 (17-148)||(13155222-13155353)
chr1 (228-374)||(13154996-13155141)
[»] chr5 (2 HSPs)
chr5 (228-355)||(3760983-3761110)
chr5 (269-331)||(2756311-2756373)
[»] chr7 (4 HSPs)
chr7 (250-358)||(19883458-19883566)
chr7 (254-358)||(48888185-48888289)
chr7 (250-304)||(29254019-29254073)
chr7 (254-333)||(6232237-6232317)
[»] chr2 (2 HSPs)
chr2 (250-360)||(16080454-16080564)
chr2 (290-338)||(38971073-38971121)
[»] chr4 (3 HSPs)
chr4 (253-333)||(18848084-18848164)
chr4 (266-339)||(55329174-55329247)
chr4 (250-325)||(42110999-42111074)
[»] chr8 (4 HSPs)
chr8 (252-358)||(42202694-42202800)
chr8 (250-325)||(44684509-44684584)
chr8 (304-361)||(3578043-3578100)
chr8 (268-360)||(25967835-25967927)
[»] chr3 (1 HSPs)
chr3 (253-333)||(51361302-51361382)
[»] chr6 (1 HSPs)
chr6 (254-333)||(380659-380739)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 13155353 - 13155222
Alignment:
Q  17 caagacgtataaagaggagagcagcaaaacaccaataatacatagggcctaaaactgatcagctaccccaaaacatccaccaaacccnnnnnnngagcag 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  13155353 caagacgtataaagaggagagcagcaaaacaccaataatacacagggcctaaaactgatcagctaccccaaaacatccaccaaacccgaaaaaagagcag 13155254  T
Q  117 cctaaaaacacagtagcagcagcagaaaaaca 148  Q
    ||||||||||||||||||||||||||||||||    
T  13155253 cctaaaaacacagtagcagcagcagaaaaaca 13155222  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 228 - 374
Target Start/End: Complemental strand, 13155141 - 13154996
Alignment:
Q  228 ctgctgaaccgccccaaaagccacaccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgt 327  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  13155141 ctgctgaaccgccccacaagccacaccaaaagtcccaaacacctctaaact-acccgagctttctcagtaaacattctttagggttcaaacaccactcgt 13155043  T
Q  328 aatagaagcaagcatgactctttaatctagatagcgtcaaactccaa 374  Q
    |||||| ||||| | ||||||||||||||||||||||| || |||||    
T  13155042 aatagaggcaagtaggactctttaatctagatagcgtctaattccaa 13154996  T

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Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 3760983 - 3761110
Alignment:
Q  228 ctgctgaaccgccccaaaagccacaccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgt 327  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||| |||||||    
T  3760983 ctgctgaaccgccccacaagccacaccaaaagtcccaaacacctctaaaactaccccagctatatcagtaaacattccttggggttcaaacagcactcgt 3761082  T
Q  328 aatagaagcaagcatgactctttaatct 355  Q
    |||||| ||| | |  ||||||||||||    
T  3761083 aatagaggcagggagaactctttaatct 3761110  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 2756311 - 2756373
Alignment:
Q  269 cctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaata 331  Q
    ||||||||| ||||||| || ||||||||||||||  ||||||||| ||||||||||||||||    
T  2756311 cctctaaaactaccccaactatctcagtaaacatttcttggggttccaacaccactcgtaata 2756373  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 358
Target Start/End: Original strand, 19883458 - 19883566
Alignment:
Q  250 acaccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaatagaagcaagcatgactctt 349  Q
    ||||||| ||||||  |||||||||||| ||||||| || ||||| ||||||||| ||||||||| |||||||||||||||||| ||| | | |||||||    
T  19883458 acaccaagagtcccggacacctctaaaactaccccaactatctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctt 19883557  T
Q  350 taatctaga 358  Q
    || ||||||    
T  19883558 tagtctaga 19883566  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 358
Target Start/End: Complemental strand, 48888289 - 48888185
Alignment:
Q  254 caaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaatagaagcaagcatgactctttaat 353  Q
    ||||||||||  ||||||||| || ||||||| |  |||||  | |||||| ||||||||| |||||||||||||||||| ||||| | ||||||||| |    
T  48888289 caaaagtcccggacacctctagaactaccccaccaatctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttagt 48888190  T
Q  354 ctaga 358  Q
    |||||    
T  48888189 ctaga 48888185  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 29254019 - 29254073
Alignment:
Q  250 acaccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattc 304  Q
    |||||||||||||||| ||||||||||| | ||||| || || ||||||||||||    
T  29254019 acaccaaaagtcccaaccacctctaaaactgccccaactatcgcagtaaacattc 29254073  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 6232317 - 6232237
Alignment:
Q  254 caaaagtcccaaacacctctaaaattaccccagctt-tctcagtaaacattctttggggttcaaacaccactcgtaataga 333  Q
    ||||||||||  |||||||||||| | |||||  || ||||| ||| ||||| ||||||||| | ||||||||||||||||    
T  6232317 caaaagtcccggacacctctaaaactgccccacattatctcaataagcattccttggggttccagcaccactcgtaataga 6232237  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 360
Target Start/End: Complemental strand, 16080564 - 16080454
Alignment:
Q  250 acaccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaatagaagcaagcatgactctt 349  Q
    |||| ||||||||| |  |||||||||| |||||||  |||||||  |||||||| ||||||||| |||||||||| ||| ||| ||||| | |||||||    
T  16080564 acacaaaaagtccctagaacctctaaaactaccccaattttctcatcaaacattccttggggttccaacaccactcataaaagaggcaaggaggactctt 16080465  T
Q  350 taatctagata 360  Q
    |||||||||||    
T  16080464 taatctagata 16080454  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 38971121 - 38971073
Alignment:
Q  290 tctcagtaaacattctttggggttcaaacaccactcgtaatagaagcaa 338  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||| ||||    
T  38971121 tctcaataagcattctttggggttccaacaccactcgtaatagaggcaa 38971073  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 18848164 - 18848084
Alignment:
Q  253 ccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaataga 333  Q
    |||||||||||  |||||||||||| ||||||| || ||||| ||  ||||| ||||||||| ||||||||||||||||||    
T  18848164 ccaaaagtcccggacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcgtaataga 18848084  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 55329247 - 55329174
Alignment:
Q  266 acacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaatagaagcaag 339  Q
    |||||||||||| | ||||| || ||||| ||| ||||| ||| ||||| |||||||||||||||||| |||||    
T  55329247 acacctctaaaactgccccacctatctcaataagcattccttgaggttccaacaccactcgtaatagaggcaag 55329174  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 42110999 - 42111074
Alignment:
Q  250 acaccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactc 325  Q
    ||||||||||||||  |||||||||||| ||||||| || ||  || || ||||| ||||||||| ||||||||||    
T  42110999 acaccaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactc 42111074  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 358
Target Start/End: Complemental strand, 42202800 - 42202694
Alignment:
Q  252 accaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaatagaagcaagcatgactcttta 351  Q
    |||| |||||||| |||||||||||| | ||||| || ||||| ||| |||||  | |||||| |||||||||||||||||| ||||| | ||||||| |    
T  42202800 accataagtcccagacacctctaaaactgccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 42202701  T
Q  352 atctaga 358  Q
     ||||||    
T  42202700 gtctaga 42202694  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 325
Target Start/End: Complemental strand, 44684584 - 44684509
Alignment:
Q  250 acaccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactc 325  Q
    ||||||||||||||| |||||||||||| ||||||| || ||  || || ||||| ||||||||| ||||||||||    
T  44684584 acaccaaaagtcccagacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactc 44684509  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 3578043 - 3578100
Alignment:
Q  304 ctttggggttcaaacaccactcgtaatagaagcaagcatgactctttaatctagatag 361  Q
    ||||||||||| |||||||||||||| ||| ||||  | |||| ||||||||||||||    
T  3578043 ctttggggttccaacaccactcgtaaaagaggcaaagaggactatttaatctagatag 3578100  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 360
Target Start/End: Original strand, 25967835 - 25967927
Alignment:
Q  268 acctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaatagaagcaagcatgactctttaatctagata 360  Q
    |||||||||| | |||| ||| ||| |  ||||| |||||||||||| | | |||||||||| ||| ||||| | |||| |||||||||||||    
T  25967835 acctctaaaactgcccccgctatcttaacaaacactctttggggttccagctccactcgtaaaagaggcaaggaggactttttaatctagata 25967927  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 51361382 - 51361302
Alignment:
Q  253 ccaaaagtcccaaacacctctaaaattaccccagctttctcagtaaacattctttggggttcaaacaccactcgtaataga 333  Q
    |||||||||||  |||||||||||| ||||||| || ||||| ||  ||||| ||||||||| |||||||||| |||||||    
T  51361382 ccaaaagtccctgacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcataataga 51361302  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 380659 - 380739
Alignment:
Q  254 caaaagtcccaaacacctctaaaattaccccagctt-tctcagtaaacattctttggggttcaaacaccactcgtaataga 333  Q
    ||||||||||  |||||||||||| | |||||  || ||||| ||| ||||| ||||||||| | ||||||||||||||||    
T  380659 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccagcaccactcgtaataga 380739  T

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