View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7616_high_2 (Length: 555)
Name: NF7616_high_2
Description: NF7616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7616_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 82285 - 82819
Alignment:
| Q |
1 |
acccgtaacccatcaacccctcgttacggaaaaaattagcatccaccgcacaatgaaactcagcatgcactctactatgtctgccagaaaatctgctaca |
100 |
Q |
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| T |
82285 |
acccgtaacccaccaacccctcgttacggaaaaaattagcatccaccgcacaatgaaactcagcatgcactctactatgtctgccagaaaatctgctaca |
82384 |
T |
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| Q |
101 |
gcctttccatattatttcctgcataattctgcaccgattgccattctgtcagcatggtttgcgacatgctcattatctgagttggatttacttgtttctg |
200 |
Q |
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| T |
82385 |
gcctt-ccatattatttcctgcataattctgcaccgattgccattctgtcagcatggtttgcaacatgctcattatctgagttggatttacttgtttctg |
82483 |
T |
|
| Q |
201 |
attccaagtacaatcattcagttcctccgtatactccaaaccaacatcaacacatggctaacaatctcatcctgctcacgggcacacacatctagcaaaa |
300 |
Q |
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| T |
82484 |
attccaagtacaatcattcagttcctccgtatactccaaaccaacatcaacacatggctaacaatctcatcctgctcacggccacacacatctagcaaaa |
82583 |
T |
|
| Q |
301 |
cttctccaaccgaatcaaactgttgcagacgggcctgaataatttgtgacaaacctgcattattcgaacaatctatactattcgtgcattgaaaaaatac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
82584 |
cttctccaaccgaatcaaactgttgcagacgggcctgaataatttgtgacaaacctgcattattcgaacaatctatactgttcgtgcattgaaaaaatac |
82683 |
T |
|
| Q |
401 |
atgccaatcattctctataccagcccatcacatcactcgcaattgctcgaacatggaacatgacgctcctgtaatctctctctttggtaaacaccttttc |
500 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
82684 |
atgccgatcattctctataccagcccatcacatcactcgcaattgctcgaacatggaacatgacgctcctgtaatctctctcttcagtaaacaccttttc |
82783 |
T |
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| Q |
501 |
tacaaatccgccacatccaattacgaactttaggag |
536 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
82784 |
tacaaatccgccacatccaattacgaactttaggag |
82819 |
T |
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