View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7616_low_1 (Length: 725)
Name: NF7616_low_1
Description: NF7616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7616_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 300 - 713
Target Start/End: Original strand, 40928800 - 40929222
Alignment:
| Q |
300 |
tatggtttggctctgttttgatgctaatggttttgatatttcccttttggttattataacaactagatttcaattacattatctcaattacagtttgact |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40928800 |
tatggtttggctctgttttgatgctaatggttttgatatttcccttttggttattataacaactggatttcaattacattatctcaattacagtttgact |
40928899 |
T |
|
| Q |
400 |
tggatatacat----------tatgtctaaattgtatttttcttggagtgtgtctgtgtacaattgtttatgtctgcaaaattgtcttcaggttgatttt |
489 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40928900 |
tggatatacatgataaatgcttatgtataaattgtatttttcttggagtgtgtttgtgtacaattgtttatgtctgcaaaattgttttcaggttgatttt |
40928999 |
T |
|
| Q |
490 |
tcctttgctatctatagatggacaaagaagagccaccaccaccaccccgccaccaaagccatatagaagaggacctaaactcacaatccatcattcatcc |
589 |
Q |
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| T |
40929000 |
gcctttgctatctatagatggacaaagaagagccaccaccaccaccccgccaccaaagccatatagaagaggacctaaactcacaatccatcattcatcc |
40929099 |
T |
|
| Q |
590 |
tttgttctgatgccaacggaggaaatacgagtagcaaattaccaggagggagaccaggatcaactttgtttgaatatttattatcattagcttattatgt |
689 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40929100 |
tttgttctgatgccaccagaggaaatacgagtagcaaattaccaggagggagaccaggatcaactttgtttgaata-ttattatcattagcttattatgt |
40929198 |
T |
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| Q |
690 |
tagttttctagattgtatgagtat |
713 |
Q |
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| T |
40929199 |
tagttttctagattgtatgagtat |
40929222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 40925872 - 40926032
Alignment:
| Q |
82 |
aattccgtggcctataaaaaattgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgacttacgtggtgtacgtt |
181 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40925872 |
aattccgtggcgtataaaaaattgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgacttacgtggt----gtt |
40925967 |
T |
|
| Q |
182 |
gcttttaccctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttgagacatggac |
246 |
Q |
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| T |
40925968 |
gcttttaccctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttgagacatggac |
40926032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 40925610 - 40925675
Alignment:
| Q |
18 |
gtgacgacataccttatttgcatgagtccatgtctcaactagccaacttgtttcggtgttgatgaa |
83 |
Q |
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| T |
40925610 |
gtgacgacataccttatttgcatgagtccatgtctcaactagccaacttgtttcggtgttgatgaa |
40925675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 40926057 - 40926018
Alignment:
| Q |
18 |
gtgacgacataccttatttgcatgagtccatgtctcaact |
57 |
Q |
| |
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| T |
40926057 |
gtgacgacataccttatttgtatgagtccatgtctcaact |
40926018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 40925699 - 40925653
Alignment:
| Q |
190 |
cctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttg |
236 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
40925699 |
cctcactacctcaaacccactttcttcatcaacaccgaaacaagttg |
40925653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 300 - 713
Target Start/End: Complemental strand, 48504965 - 48504542
Alignment:
| Q |
300 |
tatggtttggctctgttttgatgctaatggttttgatatttcccttttggttattataacaactagatttcaattacattatctcaattacagtttgact |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48504965 |
tatggtttggctctgttttgatgctaatggttttgatatttcccttttggttattataacaactggatttcaattacattatctcaattacagtttgact |
48504866 |
T |
|
| Q |
400 |
tggatatacat----------tatgtctaaattgtatttttcttggagtgtgtctgtgtacaattgtttatgtctgcaaaattgtcttcaggttgatttt |
489 |
Q |
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| T |
48504865 |
tggatatacatgataaatgcttatgtataaattgtatttttcttggagtgtgtttgtgtacaattgtttatgtctgcaaaattgttttcgggttgatttt |
48504766 |
T |
|
| Q |
490 |
tcctttgctatctatagatggacaaagaagagccaccaccaccaccccgccaccaaagccatatagaagaggacctaaactcacaatccatcattcatcc |
589 |
Q |
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| T |
48504765 |
gcctttgctatctatagatggacaaagaagagcctccaccaccaccccgccaccaaagccatatagaagaggacctaaactcacaatccatcattcatcc |
48504666 |
T |
|
| Q |
590 |
tttgttctgatgccaac-ggaggaaatacgagtagcaaattaccaggagggagaccaggatcaactttgtttgaatatttattatcattagcttattatg |
688 |
Q |
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||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |
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| T |
48504665 |
tttgttctgatgccaccaagaggaaatacgagctgcaaattaccaggagggagaccacgatcaaatttgtttgaata-ttattatcattagcttattatg |
48504567 |
T |
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| Q |
689 |
ttagttttctagattgtatgagtat |
713 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
48504566 |
ttagttctctagattgtatgagtat |
48504542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 6716248 - 6716313
Alignment:
| Q |
102 |
attgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgactta |
168 |
Q |
| |
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| T |
6716248 |
attgaagtctttgctggtcagaat-tttcgaagatggcaggagcggattaattcaacacttgactta |
6716313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 6717243 - 6717199
Alignment:
| Q |
190 |
cctcactacctcaaagccaccgtcttcatcaacaccgaaacaagt |
234 |
Q |
| |
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||||||||||||||||||||| |||| ||||||| |||||||||| |
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|
| T |
6717243 |
cctcactacctcaaagccaccttcttaatcaacatcgaaacaagt |
6717199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 604
Target Start/End: Complemental strand, 19286511 - 19286460
Alignment:
| Q |
553 |
tagaagaggacctaaactcacaatccatcattcatcctttgttctgatgcca |
604 |
Q |
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|||||||||||||| | | |||||||||||||| |||||||||| ||||||| |
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| T |
19286511 |
tagaagaggacctagaataacaatccatcattcttcctttgttccgatgcca |
19286460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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