View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7616_low_2 (Length: 608)
Name: NF7616_low_2
Description: NF7616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7616_low_2 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 574; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 20186244 - 20186848
Alignment:
| Q |
1 |
acaacccgcagcaactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20186244 |
acaacccgcagcaactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgac |
20186343 |
T |
|
| Q |
101 |
attcattttaacactcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaaga |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20186344 |
attcaatttaacactcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaaga |
20186443 |
T |
|
| Q |
201 |
gagtttatgaaaaaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20186444 |
gagtttatgaaaaaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttatt |
20186543 |
T |
|
| Q |
301 |
ttgtcatttattatagaaataaacacttatatgattagtggctgtgctatactacacgcttaattaagttgtttatctataaggcaccaataattatgga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20186544 |
ttgtcatttattatagaaataaacacttatatgattagtggttgtgcta---tacacgcttaattaagttgtttatctataaggcaccaataattatgga |
20186640 |
T |
|
| Q |
401 |
gagaaaaaccaaataataaccttagtaacaacaaaaaatcaacctgctgaaatgttctagtgtcccaagtcctgatagtaccatcggaagaacaagagct |
500 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20186641 |
gagaaaaaccaaataataacattagtaacaacaaaaaatcaacctgctgaaatgttctagtgtcccaagtcctgatagtaccatctgaagaacaagagct |
20186740 |
T |
|
| Q |
501 |
tagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgacccttgaactctccataatattgacccatcactggtgaatac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20186741 |
tagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgacccttgcactctccataatattgacccatcactggtgaatac |
20186840 |
T |
|
| Q |
601 |
aatttcac |
608 |
Q |
| |
|
|||||||| |
|
|
| T |
20186841 |
aatttcac |
20186848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 20205311 - 20205915
Alignment:
| Q |
1 |
acaacccgcagcaactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205311 |
acaacccgcagcaactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgac |
20205410 |
T |
|
| Q |
101 |
attcattttaacactcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaaga |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205411 |
attcaatttaacactcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaaga |
20205510 |
T |
|
| Q |
201 |
gagtttatgaaaaaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205511 |
gagtttatgaaaaaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttatt |
20205610 |
T |
|
| Q |
301 |
ttgtcatttattatagaaataaacacttatatgattagtggctgtgctatactacacgcttaattaagttgtttatctataaggcaccaataattatgga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205611 |
ttgtcatttattatagaaataaacacttatatgattagtggttgtgcta---tacacgcttaattaagttgtttatctataaggcaccaataattatgga |
20205707 |
T |
|
| Q |
401 |
gagaaaaaccaaataataaccttagtaacaacaaaaaatcaacctgctgaaatgttctagtgtcccaagtcctgatagtaccatcggaagaacaagagct |
500 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20205708 |
gagaaaaaccaaataataacattagtaacaacaaaaaatcaacctgctgaaatgttctagtgtcccaagtcctgatagtaccatctgaagaacaagagct |
20205807 |
T |
|
| Q |
501 |
tagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgacccttgaactctccataatattgacccatcactggtgaatac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205808 |
tagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgacccttgcactctccataatattgacccatcactggtgaatac |
20205907 |
T |
|
| Q |
601 |
aatttcac |
608 |
Q |
| |
|
|||||||| |
|
|
| T |
20205908 |
aatttcac |
20205915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 9700157 - 9700080
Alignment:
| Q |
135 |
gggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa |
212 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||| | ||||| ||||| ||||||||||| |||||| || ||||| |
|
|
| T |
9700157 |
gggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaa |
9700080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 10923737 - 10923674
Alignment:
| Q |
150 |
gacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa |
213 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||| || |||| ||| |||||||||||||||| |
|
|
| T |
10923737 |
gacttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa |
10923674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 29592129 - 29592188
Alignment:
| Q |
153 |
ttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa |
212 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||||||||||| | ||| |||||||| |
|
|
| T |
29592129 |
ttatttgagcttatctacaggcataaacactcgtgagactattcaggggagattatgaaa |
29592188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 7714401 - 7714341
Alignment:
| Q |
132 |
catgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagact |
192 |
Q |
| |
|
||||||| | |||| |||||||||||||||||||| || || |||| ||||| |||||||| |
|
|
| T |
7714401 |
catgggcatgtttggattgacttatttgagcttatataatgtcataaacacttgtgagact |
7714341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 38602485 - 38602449
Alignment:
| Q |
133 |
atgggcctatttgcattgacttatttgagcttatcta |
169 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
38602485 |
atgggcctgtttggattgacttatttgagcttatcta |
38602449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 574; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 44289823 - 44290427
Alignment:
| Q |
1 |
acaacccgcagcaactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44289823 |
acaacccgcagcaactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgac |
44289922 |
T |
|
| Q |
101 |
attcattttaacactcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaaga |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44289923 |
attcaatttaacactcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaaga |
44290022 |
T |
|
| Q |
201 |
gagtttatgaaaaaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44290023 |
gagtttatgaaaaaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttatt |
44290122 |
T |
|
| Q |
301 |
ttgtcatttattatagaaataaacacttatatgattagtggctgtgctatactacacgcttaattaagttgtttatctataaggcaccaataattatgga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44290123 |
ttgtcatttattatagaaataaacacttatatgattagtggttgtgcta---tacacgcttaattaagttgtttatctataaggcaccaataattatgga |
44290219 |
T |
|
| Q |
401 |
gagaaaaaccaaataataaccttagtaacaacaaaaaatcaacctgctgaaatgttctagtgtcccaagtcctgatagtaccatcggaagaacaagagct |
500 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44290220 |
gagaaaaaccaaataataacattagtaacaacaaaaaatcaacctgctgaaatgttctagtgtcccaagtcctgatagtaccatctgaagaacaagagct |
44290319 |
T |
|
| Q |
501 |
tagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgacccttgaactctccataatattgacccatcactggtgaatac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44290320 |
tagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgacccttgcactctccataatattgacccatcactggtgaatac |
44290419 |
T |
|
| Q |
601 |
aatttcac |
608 |
Q |
| |
|
|||||||| |
|
|
| T |
44290420 |
aatttcac |
44290427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 529506 - 529458
Alignment:
| Q |
147 |
attgacttatttgagcttatctagtggcatagacactggtgagactatt |
195 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||||| ||||| |
|
|
| T |
529506 |
attgacttatttgagcttatctactggcataaacacttgtgaggctatt |
529458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 35267505 - 35267471
Alignment:
| Q |
135 |
gggcctatttgcattgacttatttgagcttatcta |
169 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35267505 |
gggcctatttgaattgacttatttgagcttatcta |
35267471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 8094445 - 8094384
Alignment:
| Q |
152 |
cttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa |
213 |
Q |
| |
|
|||||||||||||||||| | ||||| |||| ||||||||||| ||||| |||||||||| |
|
|
| T |
8094445 |
cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaa |
8094384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 12234803 - 12234844
Alignment:
| Q |
135 |
gggcctatttgcattgacttatttgagcttatctagtggcat |
176 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
12234803 |
gggcctatttggattgacttagttgagcttatctactggcat |
12234844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 29793612 - 29793672
Alignment:
| Q |
135 |
gggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactatt |
195 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| || |||| ||||| ||||||||||| |
|
|
| T |
29793612 |
gggccaatttgtattgacttatttgagcttatctactgacataaacacttgtgagactatt |
29793672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 46852198 - 46852143
Alignment:
| Q |
137 |
gcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagact |
192 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||| ||||| ||||||| |
|
|
| T |
46852198 |
gcctatttggattgacttatttaaacttatctagtggcataaacactcctgagact |
46852143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 52014036 - 52013981
Alignment:
| Q |
142 |
tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattca |
197 |
Q |
| |
|
|||| ||| ||||||||||||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
52014036 |
tttggattaacttatttgagcttatctattggcataaacacgtgtgagactattca |
52013981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 9174965 - 9174904
Alignment:
| Q |
142 |
tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagag |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||| || || |||||||||||||| |||| |
|
|
| T |
9174965 |
tttggattgacttatttgagcttatctattagcataaacgctcgtgagactattcaaaagag |
9174904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 11297117 - 11297167
Alignment:
| Q |
142 |
tttgcattgacttatttgagcttatctagtggcatagacactggtgagact |
192 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| ||||| || ||||| |
|
|
| T |
11297117 |
tttgaattgacttatttaagcttatctagtggcataaacacttgtaagact |
11297167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 36796628 - 36796678
Alignment:
| Q |
142 |
tttgcattgacttatttgagcttatctagtggcatagacactggtgagact |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||| ||||| |||||||| |
|
|
| T |
36796628 |
tttggattgacttatttgagcttatctaatgacataaacacttgtgagact |
36796678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 31723958 - 31723901
Alignment:
| Q |
138 |
cctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactatt |
195 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | ||||| ||||| |||||||||| |
|
|
| T |
31723958 |
cctatttggattgacttatttgagcttatgtactagcataaacacttatgagactatt |
31723901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 11457241 - 11457197
Alignment:
| Q |
148 |
ttgacttatttgagcttatctagtggcatagacactggtgagact |
192 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||| |||||||| |
|
|
| T |
11457241 |
ttgacttatttgagcttatctattggcagaaacacttgtgagact |
11457197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 14706201 - 14706253
Alignment:
| Q |
138 |
cctatttgcattgacttatttgagcttatctagtggcatagacactggtgaga |
190 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| || |||| ||||| |||||| |
|
|
| T |
14706201 |
cctatttggattgacttatttgagcttacctactgacataaacacttgtgaga |
14706253 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 51929898 - 51929837
Alignment:
| Q |
134 |
tgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactatt |
195 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||| | ||||| ||||| ||||| ||||| |
|
|
| T |
51929898 |
tgggcctgtttggattgacttatttgagcttatctattagcataaacacttgtgaggctatt |
51929837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 22667558 - 22667485
Alignment:
| Q |
136 |
ggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatg |
209 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| || |||| |||| |||||||| || |||||||||||| |
|
|
| T |
22667558 |
ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatg |
22667485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 22724197 - 22724124
Alignment:
| Q |
136 |
ggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatg |
209 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| || |||| |||| |||||||| || |||||||||||| |
|
|
| T |
22724197 |
ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatg |
22724124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 49772796 - 49772852
Alignment:
| Q |
319 |
ataaacacttatatgattagtggctgtgctatactacacgcttaattaagttgtttat |
376 |
Q |
| |
|
||||||||||||||||| |||| || ||||||| || |||||||||||||||||||| |
|
|
| T |
49772796 |
ataaacacttatatgataagtgtctatgctata-taagcgcttaattaagttgtttat |
49772852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 13709757 - 13709825
Alignment:
| Q |
142 |
tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatga |
210 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| ||| |||| ||||||||||| | |||||||||||| |
|
|
| T |
13709757 |
tttgcatcgacttatttgaatttatctactgggataagcacttgtgagactatttaggagagtttatga |
13709825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 12111125 - 12111089
Alignment:
| Q |
133 |
atgggcctatttgcattgacttatttgagcttatcta |
169 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12111125 |
atgggcctatttggattgacttatttgagcttatcta |
12111089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 10016761 - 10016701
Alignment:
| Q |
153 |
ttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa |
213 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||||||||| |||||| | ||||||| |
|
|
| T |
10016761 |
ttatttgagcttatctacaggcataaacacttgtgagactatttcagagagctaatgaaaa |
10016701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 47146100 - 47146042
Alignment:
| Q |
135 |
gggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagacta |
193 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| || ||||||| |||| ||||||||| |
|
|
| T |
47146100 |
gggcctatttggattgacttatttgaacttatatattggcataagcacttgtgagacta |
47146042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 33534096 - 33534161
Alignment:
| Q |
148 |
ttgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||| |||| |||||| ||||||||| |
|
|
| T |
33534096 |
ttgacttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaa |
33534161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 46187840 - 46187897
Alignment:
| Q |
152 |
cttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatg |
209 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||| || ||||| ||||||| |
|
|
| T |
46187840 |
cttatttgagcttatctactggcataaacacttatgagactgtttaagagggtttatg |
46187897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 23983899 - 23983931
Alignment:
| Q |
137 |
gcctatttgcattgacttatttgagcttatcta |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
23983899 |
gcctatttgaattgacttatttgagcttatcta |
23983931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 23990594 - 23990626
Alignment:
| Q |
137 |
gcctatttgcattgacttatttgagcttatcta |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
23990594 |
gcctatttgaattgacttatttgagcttatcta |
23990626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 28810366 - 28810420
Alignment:
| Q |
135 |
gggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgag |
189 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||| ||||||| ||||| ||||| |
|
|
| T |
28810366 |
gggcctgtttggattgacttatttgagcttctctattggcataaacacttgtgag |
28810420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 9174970 - 9174929
Alignment:
| Q |
136 |
ggcctatttgcattgacttatttgagcttatctagtggcata |
177 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
9174970 |
ggcctatttggatttacttatttgagcttatctattggcata |
9174929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 15370238 - 15370279
Alignment:
| Q |
136 |
ggcctatttgcattgacttatttgagcttatctagtggcata |
177 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
15370238 |
ggcctgtttggattgacttatttgagcttatctactggcata |
15370279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 28803445 - 28803478
Alignment:
| Q |
136 |
ggcctatttgcattgacttatttgagcttatcta |
169 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
28803445 |
ggcctatttggattgacttatttgagcttatcta |
28803478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 36677802 - 36677730
Alignment:
| Q |
142 |
tttgcattgacttatttgagcttatctagtgg-catagacactggtgagactattcaagagagtttatgaaaa |
213 |
Q |
| |
|
|||| ||| ||||||||||| ||||||| | | |||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
36677802 |
tttggattaacttatttgagtttatctatttgacataagcacttgtgagactattcaagagagcttatgaaaa |
36677730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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