View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7616_low_4 (Length: 349)
Name: NF7616_low_4
Description: NF7616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7616_low_4 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 47580746 - 47581084
Alignment:
| Q |
11 |
acaatattttctgttttgatttttaattttgaacaatgttcatatttgcatgtagtctactggtacattttatgctgcggctagatatggaagtgcaaca |
110 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47580746 |
acaatattttttgttttgattttaaattttgaacaatgttcatatttgcatgtagtctactggtacattttatgctgcggctagatatggaagtgcaaca |
47580845 |
T |
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| Q |
111 |
cctgtgccaccttctgttatcagccgcggaactggctggctggtaaggttcactacactttgaaattatttctggaatcatggacaagaaacttatgatt |
210 |
Q |
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| T |
47580846 |
cctgtgccaccttctgttatcagccgcggaactggctggctggtaaggttcactacactttgaaattatttctggaatcatggacaagaaacttatgatt |
47580945 |
T |
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| Q |
211 |
gaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagtgtaagttt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47580946 |
gaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagtgtacgttt |
47581045 |
T |
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| Q |
311 |
acctcatatctctttctcataaaattctctttgtgctat |
349 |
Q |
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| T |
47581046 |
acctcatatctctttctcataaaattctctttgtgctat |
47581084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 196 - 349
Target Start/End: Complemental strand, 42776 - 42625
Alignment:
| Q |
196 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcag |
295 |
Q |
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| T |
42776 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttctgtaaccggaagtgcag |
42677 |
T |
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| Q |
296 |
catcagtgtaagtttacctcatatctctttctcataaaattctctttgtgctat |
349 |
Q |
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| T |
42676 |
catcggtgtacgtttatctc--atctctttctcataagattctctttgtcctat |
42625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 196 - 344
Target Start/End: Complemental strand, 27258707 - 27258561
Alignment:
| Q |
196 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcag |
295 |
Q |
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| T |
27258707 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttttgtaatcggaagtgcaa |
27258608 |
T |
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| Q |
296 |
catcagtgtaagtttacctcatatctctttctcataaaattctctttgt |
344 |
Q |
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| T |
27258607 |
catcggtgtacgtttatctc--atctctttctcataagattctctttgt |
27258561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 46005729 - 46005840
Alignment:
| Q |
22 |
tgttttgatttttaattttgaacaatgttcatatttgcatgtagtctactggtacattttatgctgcggctagatatggaagtgcaacacctgtgccacc |
121 |
Q |
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| T |
46005729 |
tgttttgatttagtattttgaacaatgttcatatttgcatgtagtctactgctacattttatgttgcggctagatatggaagtgcaacccccgtgccacc |
46005828 |
T |
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| Q |
122 |
ttctgttatcag |
133 |
Q |
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| T |
46005829 |
ttctgttatcag |
46005840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 8684597 - 8684683
Alignment:
| Q |
69 |
actggtacattttatgctgcggctagatatggaagtgcaacacctgtgccaccttctgttatcagccgcggaactggctggctggta |
155 |
Q |
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| T |
8684597 |
actggtacatcctatgctgctgcaagatatggaagtgccacgccggtgccgccttctattatcagccgcggagctggttgggtggta |
8684683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 8684842 - 8684911
Alignment:
| Q |
240 |
ttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagtgtaagtt |
309 |
Q |
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| T |
8684842 |
ttagggagtaggtgctttgtttagtggcatgtttggttgtgtaactggaactacagcatcagtgtaagtt |
8684911 |
T |
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