View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7616_low_5 (Length: 240)
Name: NF7616_low_5
Description: NF7616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7616_low_5 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47581084 - 47581306
Alignment:
| Q |
1 |
ttcattttctgcattatgcaccgcacctatttcagggaaaacgctggactattggcattgacaagagtgggaagccgaagagtcatccaaatatcagctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47581084 |
ttcattttctgcattatgcaccgcacctatttcagggaaaacgctggactattggcattgacaagagtgggaagccgaagagtcatccaaatatcagctg |
47581183 |
T |
|
| Q |
101 |
ggtttatgattttcttttctgtatttggtatgataggctaacaagctctgcatcatttcataattttagcatattttctaatctatgtaactttatgttc |
200 |
Q |
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| T |
47581184 |
gttttatgattttcttttctgtatttggtatgataggctaacaagctctgcatcatttcataattttagcatattttctaatctatgtaactttatgttc |
47581283 |
T |
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| Q |
201 |
nnnnnnnacataaattcagattt |
223 |
Q |
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|||||||||||||||| |
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| T |
47581284 |
tttttttacataaattcagattt |
47581306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 27258529 - 27258422
Alignment:
| Q |
92 |
tatcagctgggtttatgattttcttttctgtatttggtatgataggctaacaagctctgcatcatttcataattttagcatattttctaatctatgtaac |
191 |
Q |
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|||||| ||| ||||||||||| ||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27258529 |
tatcagttggttttatgatttt-tttcctgtattaggtatgatgggctaacaggctctgcatcatttcataattttagcatattttctaatctatgtaac |
27258431 |
T |
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| Q |
192 |
tttatgttc |
200 |
Q |
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| T |
27258430 |
tttatgttc |
27258422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 42598 - 42488
Alignment:
| Q |
92 |
tatcagctgggtttatgattttctttt--ctgtatttggtatgataggctaacaagctctgcatcatttcataattttagcatattttctaatctatgta |
189 |
Q |
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|||||| ||| ||||||||||| |||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42598 |
tatcagttggttttatgattttttttttcctgcatttggtatgatgggctaacaggctctgcatcatttcataattttagcatattttctaatctatgta |
42499 |
T |
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| Q |
190 |
actttatgttc |
200 |
Q |
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||||||||||| |
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| T |
42498 |
actttatgttc |
42488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 8685015 - 8685115
Alignment:
| Q |
30 |
tttcagggaaaacgctggactattggcattgacaagagtgggaagccgaagagtcatccaaatatcagctgggtttatgattttcttttctgtatttggt |
129 |
Q |
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|||||||||||| ||||| || | ||||| |||| ||| |||||| ||||||| || ||||||||||| || |||||||||||||| |||||||||||| |
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| T |
8685015 |
tttcagggaaaatgctggtttactagcattaacaaaagtaggaagcagaagagtaattcaaatatcagccggctttatgattttcttctctgtatttggt |
8685114 |
T |
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| Q |
130 |
a |
130 |
Q |
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| T |
8685115 |
a |
8685115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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