View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_high_13 (Length: 401)
Name: NF7617_high_13
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 42823244 - 42822952
Alignment:
| Q |
11 |
gtggggacacatcatcaattttctatgactagtttcactgaggg-caaaatagaaagaatctcaaatgatagatgtagaatttgtcttttttacagttgc |
109 |
Q |
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| T |
42823244 |
gtggggacacatcatcaattttctatgactagtttcagtgagggtcaaaatagaaagaatctcaaatgatagatgtagaatttgtcttttttacggttgc |
42823145 |
T |
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| Q |
110 |
tatttttgtagtgtgcatatattataaggactatttcaatattaaatccaacaaggaactattaaataattaagtaaagacatatagaagtgaacacgat |
209 |
Q |
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| T |
42823144 |
catttttgtagtgtgcatatattataaggactatttcaatattaaacccaacaaggaactattaaataattaagtaaagacaaatagaactgaacacgat |
42823045 |
T |
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| Q |
210 |
ctattctttgaatggttataaaaataattattcagtgtgttaatgttgaattacattttttattgagtagtgttttaatcacctaatcctcta |
302 |
Q |
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| T |
42823044 |
ctattctttgaatggttataaaaataattattcagtgtgttaatgttcaattacattttttattgagtagtgttttaatcacctaatcctcta |
42822952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 42822858 - 42822776
Alignment:
| Q |
300 |
ctaaaataaagttggccactgcgaagtaactagcctgactgagtaacaatgtaaaagtgtggtggaaatcttttatgtatcgt |
382 |
Q |
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| T |
42822858 |
ctaaaataaagttggtcaccgtgaagtaactagcctgactgaataacaatgtgaaagtgtggtggaaattttttatgtatcgt |
42822776 |
T |
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