View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7617_high_18 (Length: 369)

Name: NF7617_high_18
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7617_high_18
NF7617_high_18
[»] chr8 (4 HSPs)
chr8 (12-104)||(12202079-12202171)
chr8 (12-104)||(12446507-12446599)
chr8 (277-350)||(12202166-12202239)
chr8 (277-350)||(12446594-12446667)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 12202079 - 12202171
Alignment:
Q  12 atagtataccttaccaataatatttttattggtaataatttattaggcctagtcctaatttcaaaatatagtttaccttaccaataatatttt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||    
T  12202079 atagtataccttaccaataatatttttattggtaataatttattaggtctagtccaaatttcaaaatatagttcaccttaccaataatgtttt 12202171  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 12446507 - 12446599
Alignment:
Q  12 atagtataccttaccaataatatttttattggtaataatttattaggcctagtcctaatttcaaaatatagtttaccttaccaataatatttt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||    
T  12446507 atagtataccttaccaataatatttttattggtaataatttattaggtctagtccaaatttcaaaatatagttcaccttaccaataatgtttt 12446599  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 12202166 - 12202239
Alignment:
Q  277 tgttttttaggatgcaagaatttaaggatgaatcgtagattcaaagaggtgcttaatcataaatcaatgtaaaa 350  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12202166 tgttttttaggatgcaagaatttaaggatgaatcgtagatttaaagaggtgcttaatcataaatcaatgtaaaa 12202239  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 12446594 - 12446667
Alignment:
Q  277 tgttttttaggatgcaagaatttaaggatgaatcgtagattcaaagaggtgcttaatcataaatcaatgtaaaa 350  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12446594 tgttttttaggatgcaagaatttaaggatgaatcgtagatttaaagaggtgcttaatcataaatcaatgtaaaa 12446667  T

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