View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7617_high_2 (Length: 656)
Name: NF7617_high_2
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 19 - 647
Target Start/End: Original strand, 29673255 - 29673883
Alignment:
| Q |
19 |
gtattttgctggtgtggtagtaaccaaccactcaacgggcaaaggtatgatctttttcagttgcacttcaatcgaaaacaattttcgattgaagtggtgt |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29673255 |
gtattttgctggtgtgatagtaaccaaccactcaaccggcaaaggtatgatctttttcagttgcacttcaatcgaaaacaattttcgattgaagtggtgt |
29673354 |
T |
|
| Q |
119 |
ccgttttgtgtctgatacatgttggtgtacatttgatcgcttatattttcttaaattattagggttatctacgagttagtgttgtgtctgacgtccgtgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
29673355 |
ccgttttgtgtctgatacatgttggtgtacatttgatcgcttatattttcttaaattattagggttgtctacgagttagtgttgtgtctgacgtctgtgt |
29673454 |
T |
|
| Q |
219 |
tattgtcattgctgatcatctttagagtagtattttgaatttttataattattgagttgattaatgtagattcatcaaatacaatggaagaagctctgat |
318 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29673455 |
tattgtcattgttgatcatctttagagtagtattttgaaattttataattattgagttgattaatgtagattcatcaaatacaatggaagaagctctgat |
29673554 |
T |
|
| Q |
319 |
ggatatagatgactgttatcaggagcagatcaagcctgatactcttccatttgctagaaggttagttttttaaacctaaaccctttccaatgtaatgttg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29673555 |
ggatatagatgactgttatcaggagcagatcaagcctgatactcttccatttgctagaaggttagttttttaaacctaaaccctttccaatgtaatgttg |
29673654 |
T |
|
| Q |
419 |
tttgcttggattgatgagnnnnnnnnnnnnnnnngtgcatgtagctaccaacttgaagcattggataaagcgattcgcgaaaatactatagtttacttag |
518 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
29673655 |
tttgcttggattgatgagttttttgttttgttttgtgcatgtagctaccaacttgaagcattggataaagcaatccgcgaaaatactatagtttacttag |
29673754 |
T |
|
| Q |
519 |
agactggttgtggaaagactttgatagccatcatgcttcttcgaagctacgcttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcc |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
29673755 |
agactggttgtggaaagactttgatagccatcatgcttcttcgaagctacgcttatcacctccgaaagccttctccttacattgctgtttttttggttcc |
29673854 |
T |
|
| Q |
619 |
caaagttgttttggtttctcaagtattat |
647 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
29673855 |
caaagttgttttggtttctcaagtattat |
29673883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 127 - 647
Target Start/End: Original strand, 26454472 - 26454988
Alignment:
| Q |
127 |
tgtctgatacatgttggtgtacatttgatcgcttatattttcttaaattattagggttatctacgagttagtgttgtgtctgacgtccgtgttattgtca |
226 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||| ||||||||||| |
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|
| T |
26454472 |
tgtctgatccatgttggtgtatatttgatcgcttatattttcttaaattattagggttttctacgagttagtctcgtgtctgaagtccatgttattgtca |
26454571 |
T |
|
| Q |
227 |
ttgctgatcatctttagagtagtattttgaatttttataattattgagttgattaatgtagattcatcaaatacaatggaagaagctctgatggatatag |
326 |
Q |
| |
|
|||| |||||| || |||||||||| |||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
26454572 |
atgct--tcatctatatagtagtattta-aatttttataatatttgagttgattaatgtaggtccatcaaatactatggaagaagctccgatggaaatag |
26454668 |
T |
|
| Q |
327 |
atgactgttatcaggagcagatcaagcctgatactcttccatttgctagaaggttag-ttttttaaacctaaaccctttccaatgtaatgttgtttgctt |
425 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
26454669 |
atgactgttatcaggagcagatcaggcctgatactctttcatttgctagaaggttagtttttttaaacctaaacccttttcattgtaatgttgtttgctt |
26454768 |
T |
|
| Q |
426 |
ggattgatgagnnnnnnnnnnnnnnnngtgcatgtagctaccaacttgaagcattggataaagcgattcgcgaaaatactatagtttacttagagactgg |
525 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
26454769 |
ggattgatgagttttttttttttttttttg--tgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactgg |
26454866 |
T |
|
| Q |
526 |
ttgtggaaagactttgatagccatcatgcttcttcgaagctacgcttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagtt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26454867 |
ttgtggaaagactttgatagccatcatgcttcttcgaagctacgcttatcacctccgaaagccttctccttacattgctgtttttttggttcccaaagtt |
26454966 |
T |
|
| Q |
626 |
gttttggtttctcaagtattat |
647 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26454967 |
gttttggtttctcaagtattat |
26454988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 124 - 647
Target Start/End: Original strand, 26446292 - 26446810
Alignment:
| Q |
124 |
ttgtgtctgatacatgttggtgtacatttgatcgcttatattttcttaaattattagggttatctacgagtta--gtgttgtgtctgacgtccgtgttat |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |||| |||||| |
|
|
| T |
26446292 |
ttgtgtctgatccatgttggtgtacatttgatcgcttatattttcttaaattattagggttttctacgatttatagtgttgtgtctgaagtccatgttat |
26446391 |
T |
|
| Q |
222 |
tgtcattgctgatcatctttagagtagtattttgaatttttataattattgagttgattaatgtagattcatcaaatacaatggaagaagctctgatgga |
321 |
Q |
| |
|
|| ||||||| |||||| ||||||| ||||| |||||||||||| ||||| |||||||||||| | |||||||||| |||||||||||||| ||||| |
|
|
| T |
26446392 |
tgccattgct--tcatctatagagta-tattta-aatttttataatatttgagatgattaatgtaggtccatcaaataccatggaagaagctctaatgga |
26446487 |
T |
|
| Q |
322 |
tatagatgactgttatcaggagcagatcaagcctgatactcttccatttgctagaaggttagttttttaaacctaaaccctttccaatgtaatgttgttt |
421 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||||| ||||||||| |||||||| || |||||||||||| |
|
|
| T |
26446488 |
aatagatgactgttatcaagagcagatcacacctgatactcttccatttgctagaaagatagttatttaaacct-aacccttttcatagtaatgttgttt |
26446586 |
T |
|
| Q |
422 |
gcttggattgatgagnnnnnnnnnnnnnnnngtgcatgtagctaccaacttgaagcattggataaagcgattcgcgaaaatactatagtttacttagaga |
521 |
Q |
| |
|
|||||||||||| || || | ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
26446587 |
gcttggattgataagttttttttttttttttttg--tatagttatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggaga |
26446684 |
T |
|
| Q |
522 |
ctggttgtggaaagactttgatagccatcatgcttcttcgaagctacgcttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaa |
621 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26446685 |
ttggtcgtggaaagactttgatagccatcatgcttctttgaagctacgcttatcacctccgaaagccttctccttacattgctattttttttattcccaa |
26446784 |
T |
|
| Q |
622 |
agttgttttggtttctcaagtattat |
647 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26446785 |
agttgttttggtttctcaagtattat |
26446810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 136 - 343
Target Start/End: Complemental strand, 26449209 - 26449005
Alignment:
| Q |
136 |
catgttggtgtacatttgatcgcttatattttcttaaattattagggttatctacgagttagtgttgtgtctgacgtccgtgttattgtcattgctgatc |
235 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||||| || |
|
|
| T |
26449209 |
catgttggtgtacattagatctcttatattttcttaaattattagggttgtctatgagttagtgttgtgtctgacgtccatgttatagtcattgct--tc |
26449112 |
T |
|
| Q |
236 |
atctttagagtagtattttgaatttttataattattgagttgattaatgtagattcatcaaatacaatggaagaagctctgatggatatagatgactgtt |
335 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||| |||||||||||||||||| | | |||||||| |||||||||| ||||||||| |||||||||| || |
|
|
| T |
26449111 |
atctatagagtagta-tttaaatttttataatatttgagttgattaatgtaggtccttcaaatactatggaagaagttctgatggaaatagatgactatt |
26449013 |
T |
|
| Q |
336 |
atcaggag |
343 |
Q |
| |
|
|||||||| |
|
|
| T |
26449012 |
atcaggag |
26449005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 480 - 586
Target Start/End: Complemental strand, 26448907 - 26448801
Alignment:
| Q |
480 |
tggataaagcgattcgcgaaaatactatagtttacttagagactggttgtggaaagactttgatagccatcatgcttcttcgaagctacgcttatcacct |
579 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26448907 |
tggataaagtgattcgtgaaaatactatagtgtacttggagcctggttgtggagagactttgatagccatcatgcttctttgaagctacgcttatcacct |
26448808 |
T |
|
| Q |
580 |
ccgaaag |
586 |
Q |
| |
|
| ||||| |
|
|
| T |
26448807 |
ctgaaag |
26448801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 377 - 436
Target Start/End: Complemental strand, 26449006 - 26448947
Alignment:
| Q |
377 |
aggttagttttttaaacctaaaccctttccaatgtaatgttgtttgcttggattgatgag |
436 |
Q |
| |
|
||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
26449006 |
aggttagttttctaaacttaaacccttttcattgtaatgttgtttgcttggattgatgag |
26448947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 26446102 - 26446169
Alignment:
| Q |
19 |
gtattttgctggtgtggtagtaaccaaccactcaacgggcaaaggtatgatctttttcagttgcactt |
86 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| | ||||||||||||| |||||| || ||||| |
|
|
| T |
26446102 |
gtattttgctggtatagtagtaaccaaccactcaactgacaaaggtatgatccttttcaatttcactt |
26446169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 26449515 - 26449448
Alignment:
| Q |
19 |
gtattttgctggtgtggtagtaaccaaccactcaacgggcaaaggtatgatctttttcagttgcactt |
86 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | |||| | ||||||||||||| || ||||| |
|
|
| T |
26449515 |
gtattttgctggtgtggtagtaaccaataactcaacagacaaatgcatgatctttttcattttcactt |
26449448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 26454330 - 26454393
Alignment:
| Q |
23 |
tttgctggtgtggtagtaaccaaccactcaacgggcaaaggtatgatctttttcagttgcactt |
86 |
Q |
| |
|
|||| ||||||| |||||||||| ||| ||| |||||||||||||||||||||| || ||||| |
|
|
| T |
26454330 |
tttgttggtgtgctagtaaccaataactaaacaggcaaaggtatgatctttttcaatttcactt |
26454393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 8e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 460 - 644
Target Start/End: Complemental strand, 11495693 - 11495509
Alignment:
| Q |
460 |
tagctaccaacttgaagcattggataaagcgattcgcgaaaatactatagtttacttagagactggttgtggaaagactttgatagccatcatgcttctt |
559 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| || |||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11495693 |
tagctatcagcttgaagcattggaaaaagcgatccgtgaaaataccatagtgtacttggagactggttctggaaagactttgatagccatcatgcttctt |
11495594 |
T |
|
| Q |
560 |
cgaagctacgcttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtat |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11495593 |
cgaagctacgcttatcacctccgaaagccttctccttacattgctgtgtttttggttcccaaagttgttttggtttctcaagtat |
11495509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 146 - 389
Target Start/End: Complemental strand, 11496053 - 11495807
Alignment:
| Q |
146 |
tacatttgatcgcttatattttcttaaattattagggttatctacgagttagtgttgtgtctgacgtccgtgttattgtcattgctgatcatctttagag |
245 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||| | | | ||| |||||||||||||| ||| || ||||||| |||||||| | |||||||||||| |
|
|
| T |
11496053 |
tacatttgctcacttctattttcttaaattattaccggtgtttacaagttagtgttgtgtttgatgtacgtgttactgtcattgat--tcatctttagag |
11495956 |
T |
|
| Q |
246 |
tagt--attttgaatttttataattattgagttgattaatgtaga---ttcatcaaatacaatggaagaagctctgatggatatagatgactgttatcag |
340 |
Q |
| |
|
|||| ||||||| |||| || ||| || | ||||| |||||| ||||||||| || ||||| |||||||||||||| || ||||||| || || |
|
|
| T |
11495955 |
tagtgtattttgatttttgatgattttttatttgatatatgtagcaggttcatcaaagactatggaggaagctctgatggaaatggatgactacgatgag |
11495856 |
T |
|
| Q |
341 |
gagcagatcaagcctgatactcttccatttgctagaaggttagtttttt |
389 |
Q |
| |
|
||||||||| |||| || | ||||||||||| |||||||||||||||| |
|
|
| T |
11495855 |
cagcagatcaggcctaatgcacttccatttgcgagaaggttagtttttt |
11495807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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