View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_high_23 (Length: 300)
Name: NF7617_high_23
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 3861645 - 3861369
Alignment:
| Q |
7 |
tttggtgttaaagaaccagactttgaaaaaaggatacatgctttgactagatacatttctttgttattatcatgtgcatcaagtaatgttgaaaaaatct |
106 |
Q |
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| T |
3861645 |
tttgatgttaaagaaccagactttgaaaaaaggatacatgctttgactagatacatttctttgttattatcatgtgcatcaagtaatgttgaaaaaatct |
3861546 |
T |
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| Q |
107 |
gagtagtgattttggttgacatattaattattctaaatgtaaattatgatttgtttatcatgatctctttcattttattagacacggttttggctggtga |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3861545 |
gagtagtgattttggttgacatattaattattctgaatgtaaattatgatttgtttatcatgatctctttcattttattagacacggttttggctggtga |
3861446 |
T |
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| Q |
207 |
cagagagagattactatactaagcgtgatctcgtttgatttttaatatactaagaggtataataatatatcaaacct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3861445 |
cagagagagattactatactaagcgtgatctcgtttgatttttaatatactaagaggtataataatatatcaaacct |
3861369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 3870402 - 3870126
Alignment:
| Q |
7 |
tttggtgttaaagaaccagactttgaaaaaaggatacatgctttgactagatacatttctttgttattatcatgtgcatcaagtaatgttgaaaaaatct |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3870402 |
tttgatgttaaagaaccagactttgaaaaaaggatacatgctttgactagatacatttctttgttattatcatgtgcatcaagtaatgttgaaaaaatct |
3870303 |
T |
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| Q |
107 |
gagtagtgattttggttgacatattaattattctaaatgtaaattatgatttgtttatcatgatctctttcattttattagacacggttttggctggtga |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3870302 |
gagtagtgattttggttgacatattaattattctgaatgtaaattatgatttgtttatcatgatctctttcattttattagacacggttttggctggtga |
3870203 |
T |
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| Q |
207 |
cagagagagattactatactaagcgtgatctcgtttgatttttaatatactaagaggtataataatatatcaaacct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3870202 |
cagagagagattactatactaagcgtgatctcgtttgatttttaatatactaagaggtataataatatatcaaacct |
3870126 |
T |
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