View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_high_29 (Length: 256)
Name: NF7617_high_29
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_high_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 29710136 - 29709894
Alignment:
| Q |
13 |
aatatagttgtttgattgcataacattaatatagttgattcagtagtggtatttatgattcttcgaatatcctctattttgttggatttagacctaagga |
112 |
Q |
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| T |
29710136 |
aatatagttgtttgattgcataacattaatatagttgattcagtagtggtatttatgattcttcgaatatcctctattttgttggatttagacctaagga |
29710037 |
T |
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| Q |
113 |
accctaataaagtaaaggttaatattcatatgtttattattccggtacaaattataggtatgccctctatcttcttgaacctaaatatatctcattcgac |
212 |
Q |
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| T |
29710036 |
accctaataaagtaaagattaatattcatatg-ttattattcgggtaaaatttataggtaggccctctatcttcttgaacttaaatatatctcattcgat |
29709938 |
T |
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| Q |
213 |
gtatgaacggactccgatattaagggatttacattcaactttca |
256 |
Q |
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| T |
29709937 |
gtgtgaacggactccgatattaagggatttccattcaactttca |
29709894 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 28205351 - 28205407
Alignment:
| Q |
89 |
ttttgttggatttagacctaaggaaccctaataaagtaaaggttaatattcatatgt |
145 |
Q |
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| T |
28205351 |
ttttgttggatttagacctaagaaaccataataaattaaaggctcctattcatatgt |
28205407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 15339473 - 15339420
Alignment:
| Q |
93 |
gttggatttagacctaaggaaccctaataaagtaaaggttaatattcatatgtt |
146 |
Q |
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| T |
15339473 |
gttggatttagtccttaggaaccctaataaattaaactttcatattcatatgtt |
15339420 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 10079384 - 10079437
Alignment:
| Q |
92 |
tgttggatttagacctaaggaaccctaataaagtaaaggttaatattcatatgt |
145 |
Q |
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| T |
10079384 |
tgttggatttacaactaagaaaccctactaaattaaaggtttatattcatatgt |
10079437 |
T |
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