View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7617_high_30 (Length: 256)
Name: NF7617_high_30
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 15285578 - 15285358
Alignment:
| Q |
17 |
aaatgaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgtaactaattacaatatctta |
116 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15285578 |
aaatgaacccaaggttgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgtaactaattacaatatctta |
15285479 |
T |
|
| Q |
117 |
aaccttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15285478 |
aaccttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataata |
15285379 |
T |
|
| Q |
217 |
tgtcagacaaatgcttcttgc |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15285378 |
tgtcagacaaatgcttcttgc |
15285358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 15465947 - 15465727
Alignment:
| Q |
17 |
aaatgaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgtaactaattacaatatctta |
116 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465947 |
aaatgaacccaaggttgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgtaactaattacaatatctta |
15465848 |
T |
|
| Q |
117 |
aaccttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465847 |
aaccttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataata |
15465748 |
T |
|
| Q |
217 |
tgtcagacaaatgcttcttgc |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15465747 |
tgtcagacaaatgcttcttgc |
15465727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 15314952 - 15314747
Alignment:
| Q |
21 |
gaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgta-actaattacaatatcttaaac |
119 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||||||||| |||||| | |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
15314952 |
gaagccaaggtcgtta--acccaactgacactccatatgtgccacct----------atatataaggcatccaaggtagactaattacaatatcttaaac |
15314865 |
T |
|
| Q |
120 |
cttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataatatgt |
219 |
Q |
| |
|
||| |||||| | ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| || |||| |||||||||||| |||||||| |
|
|
| T |
15314864 |
ctttatatctagtgataacatggtgagatttatctcctcccaaaatgcaccattctctctattattttcatttataataatattaaatatagtaatatgt |
15314765 |
T |
|
| Q |
220 |
cagacaaatgcttcttgc |
237 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15314764 |
gagacaaatgcttcttgc |
15314747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 15495321 - 15495116
Alignment:
| Q |
21 |
gaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgta-actaattacaatatcttaaac |
119 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||||||||| |||||| | |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
15495321 |
gaagccaaggtcgtta--acccaactgacactccatatgtgccacct----------atatataaggcatccaaggtagactaattacaatatcttaaac |
15495234 |
T |
|
| Q |
120 |
cttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataatatgt |
219 |
Q |
| |
|
||| |||||| | ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| || |||| |||||||||||| |||||||| |
|
|
| T |
15495233 |
ctttatatctagtgataacatggtgagatttatctcctcccaaaatgcaccattctctctattattttcatttataataatattaaatatagtaatatgt |
15495134 |
T |
|
| Q |
220 |
cagacaaatgcttcttgc |
237 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15495133 |
gagacaaatgcttcttgc |
15495116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 15304042 - 15303873
Alignment:
| Q |
77 |
tatatatcatgcatccaacgta-actaattacaatatcttaaaccttcgtatctactcata--acatggtgagatctttctcctcccaaaatgcacccct |
173 |
Q |
| |
|
||||||| ||||||| || ||| ||||||||||||||| ||||||||| |||||| | ||| |||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
15304042 |
tatatatgatgcatctaaggtagactaattacaatatcataaaccttcatatctagtgatataacatggtgagatttatctcctctcaaaatgcacccct |
15303943 |
T |
|
| Q |
174 |
ctctctattattttcagttttaatcatattaaatataa------taatatgtcagacaaatgcttcttgc |
237 |
Q |
| |
|
||||||||| |||||| || |||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
15303942 |
ctctctattgttttcatttgtaatcatattaaatataaatatagtaatatgtgagacaaatacttcttgc |
15303873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 15484411 - 15484242
Alignment:
| Q |
77 |
tatatatcatgcatccaacgta-actaattacaatatcttaaaccttcgtatctactcata--acatggtgagatctttctcctcccaaaatgcacccct |
173 |
Q |
| |
|
||||||| ||||||| || ||| ||||||||||||||| ||||||||| |||||| | ||| |||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
15484411 |
tatatatgatgcatctaaggtagactaattacaatatcataaaccttcatatctagtgatataacatggtgagatttatctcctctcaaaatgcacccct |
15484312 |
T |
|
| Q |
174 |
ctctctattattttcagttttaatcatattaaatataa------taatatgtcagacaaatgcttcttgc |
237 |
Q |
| |
|
||||||||| |||||| || |||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
15484311 |
ctctctattgttttcatttgtaatcatattaaatataaatatagtaatatgtgagacaaatacttcttgc |
15484242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 15298761 - 15298622
Alignment:
| Q |
21 |
gaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgta-actaattacaatatcttaaac |
119 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||||||||| |||||| |||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
15298761 |
gaagccaaggtcgtta--acccaactgacactccatatgtgccacct----------atatataatgcattcaaggtagactaattacaatatcttaaac |
15298674 |
T |
|
| Q |
120 |
cttcgtatctactcataaca-tggtgagatctttctcctcccaaaatgcacc |
170 |
Q |
| |
|
|||| |||||| | |||||| |||| |||| | |||||| |||||||||||| |
|
|
| T |
15298673 |
cttcatatctagtgataacattggtcagatttatctccttccaaaatgcacc |
15298622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 15479130 - 15478991
Alignment:
| Q |
21 |
gaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgta-actaattacaatatcttaaac |
119 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||||||||| |||||| |||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
15479130 |
gaagccaaggtcgtta--acccaactgacactccatatgtgccacct----------atatataatgcattcaaggtagactaattacaatatcttaaac |
15479043 |
T |
|
| Q |
120 |
cttcgtatctactcataaca-tggtgagatctttctcctcccaaaatgcacc |
170 |
Q |
| |
|
|||| |||||| | |||||| |||| |||| | |||||| |||||||||||| |
|
|
| T |
15479042 |
cttcatatctagtgataacattggtcagatttatctccttccaaaatgcacc |
15478991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 15447694 - 15447665
Alignment:
| Q |
37 |
taacccaattgatactccatatgtgccacc |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15447694 |
taacccaattgatactccatatgtgccacc |
15447665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University