View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7617_high_4 (Length: 615)
Name: NF7617_high_4
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 311 - 601
Target Start/End: Original strand, 9463094 - 9463383
Alignment:
| Q |
311 |
ctctcaagttggactcaatttgttggatttctttttgtcactatcctaatagcagtcactttcccttatataatgcttttgatatttgagattgtttctg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9463094 |
ctctcaagttggactcaatttgttggatttctttttgtgaatatcctaatagtagtcactttcccttatataatgcttttgatatt-gagattgtttctg |
9463192 |
T |
|
| Q |
411 |
aaaattttaattgacataatattttctccttgagaaccgtatgtatatcctatattattcatattataaagtgtaaggtattttaatttaaatttaatta |
510 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9463193 |
aaaaatttaatagacaaaatattttctccttgagaaccatatgtatatcctataatattcatattataaagtgtaaggtattttaatttaaatttaatta |
9463292 |
T |
|
| Q |
511 |
agggaaaaattctctcccattatgtgcacggatatacacactaaaactgaatgttccttttttcagttagaagttgattaagggtcctata |
601 |
Q |
| |
|
|| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
9463293 |
agagaaaaattctctctcattcggtgcacggatatacacactaaaactgaatgttcctttttttagttataacttgattaagggtcctata |
9463383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 9462954 - 9463027
Alignment:
| Q |
171 |
tgtcgtattatttgtatcttaacaataatattatgatgaaaatttaatttcaaccaacacgttttactggaaac |
244 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9462954 |
tgtcgtattatttgtatcttaaaaataatattatgataaaaaattaatttcaaccaacacgttttactggaaac |
9463027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 9462803 - 9462841
Alignment:
| Q |
16 |
attatgctctggtgtcattttttcgaaatcctctggtgt |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462803 |
attatgctctggtgtcattttttcgaaatcctctggtgt |
9462841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University