View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7617_high_7 (Length: 489)

Name: NF7617_high_7
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7617_high_7
NF7617_high_7
[»] scaffold0085 (1 HSPs)
scaffold0085 (76-473)||(50612-51009)
[»] chr1 (5 HSPs)
chr1 (257-341)||(7347678-7347762)
chr1 (257-332)||(46937555-46937630)
chr1 (266-341)||(35220793-35220868)
chr1 (259-332)||(49825844-49825917)
chr1 (249-293)||(5095822-5095866)
[»] chr8 (2 HSPs)
chr8 (257-341)||(1310115-1310199)
chr8 (270-338)||(7864481-7864548)
[»] chr4 (1 HSPs)
chr4 (248-339)||(26275534-26275625)
[»] chr7 (1 HSPs)
chr7 (252-339)||(30900106-30900193)
[»] chr5 (3 HSPs)
chr5 (266-332)||(27725501-27725567)
chr5 (250-332)||(9634949-9635030)
chr5 (266-312)||(33178399-33178445)
[»] chr3 (4 HSPs)
chr3 (258-336)||(36060251-36060329)
chr3 (249-341)||(33947627-33947719)
chr3 (269-339)||(162900-162970)
chr3 (249-329)||(54084289-54084369)
[»] chr6 (2 HSPs)
chr6 (251-332)||(13427711-13427792)
chr6 (257-340)||(9641085-9641168)
[»] chr2 (2 HSPs)
chr2 (272-341)||(11530029-11530098)
chr2 (271-332)||(17442970-17443031)


Alignment Details
Target: scaffold0085 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 76 - 473
Target Start/End: Original strand, 50612 - 51009
Alignment:
Q  76 atgcaggttaaagatgatggtacatcatatagaaagcgcgtataagcaagaaagtgataaaatcaataagtagaaatgaagataaaatgcaagtaataga 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50612 atgcaggttaaagatgatggtacatcatatagaaagcgcgtataagcaagaaagtgataaaatcaataagtagaaatgaagataaaatgcaagtaataga 50711  T
Q  176 gaaagaatggaaaccgcgatatcgatgtaaataagtgttgtttttttatggcagtgccnnnnnnnnnnnggcagctatagagctattgcttagcagaatt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||           |||||||||||||||||||||||||||||||    
T  50712 gaaagaatggaaaccgcgatatcgatgtaaataagtgttgtttttttatggcggtgcctttttttttttggcagctatagagctattgcttagcagaatt 50811  T
Q  276 tgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctataggttgttatagcactattgcctagcaaaaattgaa 375  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  50812 tgaacaaattgcaattgttccgaaatacactatttagttcaagatattgtgaaatagaggctataggttgttatagcactattgcgtagcgaaaattgaa 50911  T
Q  376 taaaacactattttctgtgatccggatgtaaatgcttaccctgatagacagacaacatccacatactatgtatcagatatagggctgtggaataattg 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50912 taaaacactattttctgtgatccggatgtaaatgcttaccctgatagacagacaacatccacatactatgtatcagatatagggctgtggaataattg 51009  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 7347678 - 7347762
Alignment:
Q  257 gctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 341  Q
    |||||||| |||||||||||||||||||||| ||||||  | ||||||||||||||| ||| |||||||||||||| ||||||||    
T  7347678 gctattgcatagcagaatttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgtgaaatagcggctatag 7347762  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 46937555 - 46937630
Alignment:
Q  257 gctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 332  Q
    ||||||||||||| ||||||||||||| ||| |||||||||  || | ||||||||| ||| ||||||||||||||    
T  46937555 gctattgcttagcggaatttgaacaaagtgctattgttccgcgatgcgctatttagtacaaaatattgtgaaatag 46937630  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 35220793 - 35220868
Alignment:
Q  266 tagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 341  Q
    ||||||||| ||||||||| |||||||||||| |||||  ||| |||| ||| ||||||||||||||  |||||||    
T  35220793 tagcagaatctgaacaaatagcaattgttccgcaatacgttatctagtacaaaatattgtgaaatagttgctatag 35220868  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 49825844 - 49825917
Alignment:
Q  259 tattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 332  Q
    |||||| |||||||||||||  |||   | ||||||| | ||||||||||||||| ||| ||||||||||||||    
T  49825844 tattgcatagcagaatttgactaaaacactattgttctgcaatacactatttagtacaaaatattgtgaaatag 49825917  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 5095822 - 5095866
Alignment:
Q  249 gctatagagctattgcttagcagaatttgaacaaattgcaattgt 293  Q
    ||||||||||| | || |||||||||||||||||||||| |||||    
T  5095822 gctatagagctctagcatagcagaatttgaacaaattgctattgt 5095866  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 1310115 - 1310199
Alignment:
Q  257 gctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 341  Q
    |||||| | |||||||||||||||||||||| ||||||||   |||||||||||||| ||| |||||||||||||| ||||||||    
T  1310115 gctatttcgtagcagaatttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcggctatag 1310199  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 7864481 - 7864548
Alignment:
Q  270 agaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggcta 338  Q
    |||||||||||||||| | ||| ||||| ||||||||||||||| ||| |||||||  | |||||||||    
T  7864481 agaatttgaacaaatttctattattccgcaatacactatttagtacaa-atattgtctagtagaggcta 7864548  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 248 - 339
Target Start/End: Complemental strand, 26275625 - 26275534
Alignment:
Q  248 agctatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctat 339  Q
    ||||||||  ||||||| |||| | |||||||||||| || |||||||| |||||| ||||||||| ||| |||||||||||||| ||||||    
T  26275625 agctatagcactattgcatagcgggatttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagcggctat 26275534  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 30900193 - 30900106
Alignment:
Q  252 atagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctat 339  Q
    |||| |||||||| |||| |||||||||| ||| || ||||||| |  |||||||||||||| ||| |||||||||||||| ||||||    
T  30900193 atagtgctattgcatagcggaatttgaacgaatcgctattgttcagcgatacactatttagtacaaaatattgtgaaatagtggctat 30900106  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 27725501 - 27725567
Alignment:
Q  266 tagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 332  Q
    |||||||||||||||||||  ||||||||||| ||| ||||||||||| ||| ||||||| ||||||    
T  27725501 tagcagaatttgaacaaatcacaattgttccgcaatccactatttagtacaaaatattgtcaaatag 27725567  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 9635030 - 9634949
Alignment:
Q  250 ctatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 332  Q
    |||||| || |||||||||| |||||||||||||| || |||||||||  ||||||||||| ||  || ||||| ||||||||    
T  9635030 ctatagtgccattgcttagcggaatttgaacaaatggctattgttccg-catacactattttgtataaaatattttgaaatag 9634949  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 33178399 - 33178445
Alignment:
Q  266 tagcagaatttgaacaaattgcaattgttccgaaatacactatttag 312  Q
    |||||||||||||||||||||| ||||||| | |||||||| |||||    
T  33178399 tagcagaatttgaacaaattgccattgttctgcaatacactttttag 33178445  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 36060251 - 36060329
Alignment:
Q  258 ctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggc 336  Q
    ||||||| | ||||||||||||||||| ||| |||||||  |||||  |||||||| ||| ||||||||||||||||||    
T  36060251 ctattgcattgcagaatttgaacaaatcgcatttgttccacaatacgttatttagtacaaaatattgtgaaatagaggc 36060329  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 33947627 - 33947719
Alignment:
Q  249 gctatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 341  Q
    ||||||| |||||||| || |||||||||||||||   | ||||||| || |||||| ||| |||  || ||||| |||||||||||||||||    
T  33947627 gctatagtgctattgcataacagaatttgaacaaaacactattgttcagagatacaccattcagtaaaaaatattttgaaatagaggctatag 33947719  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 162900 - 162970
Alignment:
Q  269 cagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctat 339  Q
    ||||||||||||||||||  ||| ||| |  || | ||||||||| ||| |||||||||||||||||||||    
T  162900 cagaatttgaacaaattgttattattctgcgatgcgctatttagtacaaaatattgtgaaatagaggctat 162970  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 54084289 - 54084369
Alignment:
Q  249 gctatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaa 329  Q
    |||||||  ||||||| |||| ||||||||||||| ||  | ||||||  ||||| ||||||||| ||| |||||||||||    
T  54084289 gctatagcactattgcatagcggaatttgaacaaactgataatgttccacaatacgctatttagtgcaaaatattgtgaaa 54084369  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 13427792 - 13427711
Alignment:
Q  251 tatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 332  Q
    |||||||||||||| ||||||||||| ||||||| || ||||||||   | ||| |||||||| ||| ||||||||||||||    
T  13427792 tatagagctattgcatagcagaatttcaacaaatcgctattgttccatgacacattatttagtacaaaatattgtgaaatag 13427711  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 9641168 - 9641085
Alignment:
Q  257 gctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctata 340  Q
    |||||||| ||| |||||||||||||||||| ||| ||| |  ||||||||||||||   | |||||| ||||||| |||||||    
T  9641168 gctattgcatagtagaatttgaacaaattgctattcttctgcgatacactatttagtatcaaatattgagaaatagcggctata 9641085  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 11530029 - 11530098
Alignment:
Q  272 aatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 341  Q
    |||||||||||||  | ||||||| |  |||||||||||||| ||  |||||||||||||| ||||||||    
T  11530029 aatttgaacaaatcactattgttctgcgatacactatttagtacataatattgtgaaatagcggctatag 11530098  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 17443031 - 17442970
Alignment:
Q  271 gaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 332  Q
    ||||||||||||||||| ||||||| ||| |||  |||||||| ||| || |||||||||||    
T  17443031 gaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatag 17442970  T

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