View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7617_high_8 (Length: 457)
Name: NF7617_high_8
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_high_8 |
 | |
|
| [»] scaffold0643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Complemental strand, 33295375 - 33294946
Alignment:
| Q |
14 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33295375 |
atatactcagccccatgaaccacttatacagcaggttaatcaacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
33295276 |
T |
|
| Q |
114 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33295275 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtcttacagaaattctaacatatttaactcaa |
33295176 |
T |
|
| Q |
214 |
taatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaatactaactaattctactaacag |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33295175 |
taatcaaatattgaagcttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaatactaactaattctactaacag |
33295076 |
T |
|
| Q |
314 |
cccttacctcaatcttagacacttctccctgcttcccacttgaatttctacttcaaaacttgaaacttgaaccactactatcaccatccaaacatgtata |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33295075 |
cccttacctcaatcttagacacttctccctgcttcccacttgaatttctacttcaaaacttgaaacttgaaccactactatcaccatccaaacatgtata |
33294976 |
T |
|
| Q |
414 |
aattcttgaaacttgaacttggcttaaaac |
443 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
33294975 |
aattcttgaagcttgaacttggcttaaaac |
33294946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 351
Target Start/End: Original strand, 8520519 - 8520853
Alignment:
| Q |
14 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8520519 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacatagtcatttaaggcaaaatttgcaaaacagcttaactgacagcttatgacct |
8520618 |
T |
|
| Q |
113 |
ctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactca |
212 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8520619 |
ctagacaattaaatttcaactcaaattttccagaatcaaagaaaatatgtacacacatctcctacaccagtcttacagaaattctaacatattaaactca |
8520718 |
T |
|
| Q |
213 |
ataatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaatactaactaattctactaaca |
312 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
8520719 |
ataatcaaatatggaagttttcggaacaacttttgacttttagcttctagcttttcatttcaaacagcaacaacaacaat----actaatgctactaaca |
8520814 |
T |
|
| Q |
313 |
gcccttacctcaatcttagacacttctccctgcttccca |
351 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
8520815 |
gcccttaactcaatcttagacacttctccttgcttccca |
8520853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 29933794 - 29933640
Alignment:
| Q |
14 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagcttact-gacagcttatgacct |
112 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||| |||||||||||| |||||||||| | | |||||||||||| | ||||||||||| ||| |
|
|
| T |
29933794 |
atatactcagagccacgaaccacttatacagcagcttaaaccacaacttagtcatttaaggcattttgctcaaaacagcttaattgacagcttatgccct |
29933695 |
T |
|
| Q |
113 |
ctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtataca |
167 |
Q |
| |
|
||| ||||||||||||| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
29933694 |
ctaaacaattcaatttctattctaattttccagaatcaaagaaaacatgtataca |
29933640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 5248982 - 5248830
Alignment:
| Q |
95 |
actgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaat |
194 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| | | ||| ||||||||| ||| ||| |||| |||||| |||||| |||| | |||||| || |
|
|
| T |
5248982 |
actgacagcttatgccctctaaacaattcaatttttattaaaaatttccagaagcaacccaaacatgtttacacaccttctaaaccaattgtacagagat |
5248883 |
T |
|
| Q |
195 |
tctaacatatttaactcaataatcaaatattgaaacttttggaacaacttatg |
247 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| | | |||| ||||||||||||| |
|
|
| T |
5248882 |
tctaacatgtttaactcaataatcaactatggtagctttaggaacaacttatg |
5248830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 41529456 - 41529733
Alignment:
| Q |
14 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529456 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
41529555 |
T |
|
| Q |
114 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| ||| |
|
|
| T |
41529556 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaa |
41529655 |
T |
|
| Q |
214 |
taatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaa |
291 |
Q |
| |
|
||||||| || ||| |||||||||||||||||| |||||| || |||||||||||| ||||||| ||||||||||| |
|
|
| T |
41529656 |
taatcaactacggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaa |
41529733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 37368117 - 37367840
Alignment:
| Q |
14 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37368117 |
atatactcagccccatgaaccacttatacagaaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
37368018 |
T |
|
| Q |
114 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || | ||||||||||||||||||| ||| |
|
|
| T |
37368017 |
tagacaattcaatttcaactcaaattttccagaatcaaataaaatatgtatacacagctcctacaccagtaataaataaattctaacatatttaacccaa |
37367918 |
T |
|
| Q |
214 |
taatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaa |
291 |
Q |
| |
|
||||||| || ||| |||||||||||||||||| |||||| || |||||||||||| |||||||||||||| |||| |
|
|
| T |
37367917 |
taatcaactacggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagcaacaacgacaa |
37367840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 2696233 - 2695964
Alignment:
| Q |
14 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2696233 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
2696134 |
T |
|
| Q |
114 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
2696133 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtcataaagaaattctaacatatttaactc-- |
2696036 |
T |
|
| Q |
214 |
taatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaa |
291 |
Q |
| |
|
|| | ||| |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2696035 |
------aaaacggaagcttttggaacaacttatggcttttaacttctagcttttcattccaaacagcaacaacaacaa |
2695964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 34 - 288
Target Start/End: Original strand, 31315985 - 31316241
Alignment:
| Q |
34 |
cacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaac |
132 |
Q |
| |
|
||||| ||||||| |||||| ||| |||||| ||||||| ||||||||||| ||||||||| ||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
31315985 |
cacttttacagcaaattaatcaacagcttagtcatttaagacaaaattcccataacagcttaactgacagtttatgacctctaaacaattccatttcaat |
31316084 |
T |
|
| Q |
133 |
tcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaac-atatttaactcaataatcaaatattgaaact |
231 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| ||| ||| | |||| ||| ||||| ||||| | ||| ||| || ||| || || |
|
|
| T |
31316085 |
tcaaattttccagaatcaaataaaacatgtatacacagctcctaatccatttctacaccaatcctaacaatattaattccaaaaattaactatgaaagct |
31316184 |
T |
|
| Q |
232 |
tttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaa |
288 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
31316185 |
tttggaacaacttatgacttttagcctctagcttttctttccaaacagcaacaacaa |
31316241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 2742566 - 2742412
Alignment:
| Q |
14 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacct |
112 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||| |||||||||||| ||||||| || | | ||||||| |||| ||||||||||||| ||| |
|
|
| T |
2742566 |
atatactcagagccacgaaccacttatacagcagcttaaaccacaacttagtcatttaagacattttgctcaaaacaacttaactgacagcttatgccct |
2742467 |
T |
|
| Q |
113 |
ctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtataca |
167 |
Q |
| |
|
||| ||||||||||||| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
2742466 |
ctaaacaattcaatttctattctaattttccagaatcaaagaaaacatgtataca |
2742412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 31330988 - 31330786
Alignment:
| Q |
87 |
aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtct |
185 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||| |||| |||||| || ||| || | |
|
|
| T |
31330988 |
aacagcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacacatctcctaagacactta |
31330889 |
T |
|
| Q |
186 |
tacagaaattctaacat-atttaactcaataatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaaca |
284 |
Q |
| |
|
|| ||||||||||| | ||||||||||||||||| | | | ||||||||||||||||||||||||| | ||||||||||||| | |||||||||| |
|
|
| T |
31330888 |
tattgaaattctaacttgttttaactcaataatcaattctgatagcttttggaacaacttatgacttttaactgctagcttttcattccgaacagcaaca |
31330789 |
T |
|
| Q |
285 |
aca |
287 |
Q |
| |
|
||| |
|
|
| T |
31330788 |
aca |
31330786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 31337709 - 31337507
Alignment:
| Q |
87 |
aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtct |
185 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||| |||| |||||| || ||| || | |
|
|
| T |
31337709 |
aacagcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacacatctcctaagacactta |
31337610 |
T |
|
| Q |
186 |
tacagaaattctaacat-atttaactcaataatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaaca |
284 |
Q |
| |
|
|| ||||||||||| | ||||||||||||||||| | | | ||||||||||||||||||||||||| | ||||||||||||| | |||||||||| |
|
|
| T |
31337609 |
tattgaaattctaacttgttttaactcaataatcaattctgatagcttttggaacaacttatgacttttaactgctagcttttcattccgaacagcaaca |
31337510 |
T |
|
| Q |
285 |
aca |
287 |
Q |
| |
|
||| |
|
|
| T |
31337509 |
aca |
31337507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 5558834 - 5559104
Alignment:
| Q |
14 |
atatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558834 |
atatactcagccccatgaaccacttatacagcaggttagtccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctc |
5558933 |
T |
|
| Q |
114 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaa |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| ||| |
|
|
| T |
5558934 |
tagacaattcaatttcaactcgaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaa |
5559033 |
T |
|
| Q |
214 |
taatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaa |
291 |
Q |
| |
|
||||||| || ||| |||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
5559034 |
taatcaactacggaagcttttggaacaacttatggcttt-------tagcttttcattccaaacagaaacaacaacaa |
5559104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 34150330 - 34150119
Alignment:
| Q |
37 |
ttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactca |
135 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||| |||||||| ||||| |||||| |||||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
34150330 |
ttatacagcagattaatccataacttagtaatttaagtcaaaattcgcaaaaaagcttaactgacagcttatgatctctagaaaattcaatttcaattca |
34150231 |
T |
|
| Q |
136 |
aattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaataatcaaatattgaaacttttg |
235 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||| ||| | || | |||||| |||||||||| ||||||||||||||||| | | | | |||||| |
|
|
| T |
34150230 |
aattttccagaaacaaagaaaacatgtataaacagctcctaaatcacccatacagatattctaacatgtttaactcaataatcaattctggtagcttttg |
34150131 |
T |
|
| Q |
236 |
gaacaacttatg |
247 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34150130 |
gaacaacttatg |
34150119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 55 - 291
Target Start/End: Complemental strand, 25637566 - 25637330
Alignment:
| Q |
55 |
cacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaag |
153 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||||||||| |||||| ||||| || ||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
25637566 |
cacaacttagtcatttaaggcatt-ttctcaaaacagcttaactgacaacttatacccactaaacaattcaatttctgttcaaattttccagaagcaaac |
25637468 |
T |
|
| Q |
154 |
aaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaataatcaaatattgaaacttttggaacaacttatgactttt |
253 |
Q |
| |
|
| | ||||||| |||||| ||| ||| | ||||| |||||||||| || | ||| ||||| || || |||||| ||||||||||| ||||| |
|
|
| T |
25637467 |
catacatgtatatacagctcctaacccatccctacagcaattctaacacgttgattccaaaaatcagttacgaaagcttttgaaacaacttatggctttt |
25637368 |
T |
|
| Q |
254 |
aggttctagcttttcatttcaaacagcaacaacaacaa |
291 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25637367 |
agcttctagcttttcattccaaacagcaacaacaacaa |
25637330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 17054380 - 17054163
Alignment:
| Q |
37 |
ttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaa |
136 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17054380 |
ttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaa |
17054281 |
T |
|
| Q |
137 |
attttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaataatcaaatattgaaacttttgg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||| ||||||||||||| |||||||||| | ||| ||||||| |
|
|
| T |
17054280 |
attttccagaatcaaagaaaatatgtatacacagttcctacaccagtcataaagaaattataacatatttaacccaataatcaactgcggaagcttttgg |
17054181 |
T |
|
| Q |
237 |
aacaacttatgactttta |
254 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
17054180 |
aacaacttatggctttta |
17054163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 18112413 - 18112724
Alignment:
| Q |
15 |
tatactcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctc |
113 |
Q |
| |
|
|||| ||||||| | ||| ||||| ||||||| |||||| |||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
18112413 |
tataatcagccctaagaatcacttttacagcaaattaatcaacaacttagtcatttaagacaaaattcccataacagcttaactgacagcttatgacctc |
18112512 |
T |
|
| Q |
114 |
tagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaac-atatttaactca |
212 |
Q |
| |
|
|| ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||| ||| ||| | |||| ||| ||||| ||||| | || |
|
|
| T |
18112513 |
taaacaattccatttcaattcaaattttccagaatcaaataaaacatgtatacacagctcctaatccatttctacaccaatcctaacaatattaattcca |
18112612 |
T |
|
| Q |
213 |
ataatcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaatactaactaattctactaaca |
312 |
Q |
| |
|
| |||||| ||| || |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
18112613 |
aaaatcaactatgaaagcttttggaacaacttatgacttttagactctagcttttctttccaaacaacaacaacaacaatactaa-----gctactaaca |
18112707 |
T |
|
| Q |
313 |
gcccttacctcaatctt |
329 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
18112708 |
gccctcacctcaatctt |
18112724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 7480 - 7265
Alignment:
| Q |
37 |
ttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaa |
136 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7480 |
ttatacagcagattaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactaacagcttatgacctctagacaattcaatttcaactcaa |
7381 |
T |
|
| Q |
137 |
attttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaataatcaaatattgaaacttttgg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| || | ||||||||||||||||||||| |||||||||| | ||| ||||||| |
|
|
| T |
7380 |
attttccagaatcaaagaaaatatgtatacacagttcctacaccaatc--aaagaaattctaacatatttaacccaataatcaactgcggaagcttttgg |
7283 |
T |
|
| Q |
237 |
aacaacttatgactttta |
254 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
7282 |
aacaacttatggctttta |
7265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 9142747 - 9142952
Alignment:
| Q |
49 |
ttaatccacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaat |
148 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
9142747 |
ttaatccacaacttagtcatttaaggcaaaattcccaaaacaactcactgacagcttatgacctctaggcaattcaatttcaactcaaattttccaaaat |
9142846 |
T |
|
| Q |
149 |
caaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaataatcaaatattgaaacttttggaacaacttatga |
248 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
9142847 |
caaagaaaatatgtatacacagttcctacaccagtcataaagaaattctaacatatttaacctaataatcaaccgcggaagcttttggaacaacttatgg |
9142946 |
T |
|
| Q |
249 |
ctttta |
254 |
Q |
| |
|
|||||| |
|
|
| T |
9142947 |
ctttta |
9142952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 4853581 - 4853729
Alignment:
| Q |
20 |
tcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagac |
118 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||| |||||||||||| |||||||||| | | ||||||||||| ||||||||||||| |||||| || |
|
|
| T |
4853581 |
tcagccctatgaatcacttatacagcagtgtaaaccacaacttagtcatttaaggcattttacttaaaacagcttaactgacagcttatgccctctaaac |
4853680 |
T |
|
| Q |
119 |
aattcaatttcaactcaaattttccagaatcaaagaaaatatgtataca |
167 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
4853681 |
aattcaatttctattctaattttccagaatcaaagaaaacatgtataca |
4853729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 15028326 - 15028261
Alignment:
| Q |
28 |
atgaaccacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagct |
93 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15028326 |
atgaatcacttatacagcagcttaatccacaacttagtcatttaaggcaaaattcccaaaacagct |
15028261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 6734546 - 6734274
Alignment:
| Q |
15 |
tatactcagccccatgaaccacttatacagcaggttaa-tccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacct |
112 |
Q |
| |
|
|||| ||||||| ||||||| || |||||||| |||| | |||||||| || |||||||||| | | |||||||||||| |||||| |||||||||| |
|
|
| T |
6734546 |
tataatcagccctatgaaccttttttacagcagtttaaattcacaactttgtcatttaaggcattttgctcaaaacagcttaactgacaacttatgacct |
6734447 |
T |
|
| Q |
113 |
ctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactca |
212 |
Q |
| |
|
||| |||||||||||||| |||||||| || | |||||||||||||| ||| ||| | ||||||||| || ||| || || ||| |
|
|
| T |
6734446 |
ctaaacaattcaatttca--------------gaatcaaataatacatgtatacacagctcctaacccatttctacagaaatcctcgcatgttaaattca |
6734361 |
T |
|
| Q |
213 |
ataa--tcaaatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaatactaa |
297 |
Q |
| |
|
| || || | ||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
6734360 |
aaaaaatcgattatggaagcttttggaacaacttatgacttttagcttctagcttttcattccaaacaacaacaacaacaacactaa |
6734274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 5600597 - 5600724
Alignment:
| Q |
22 |
agccccatgaaccacttatacagcaggttaa-tccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagaca |
119 |
Q |
| |
|
||||| |||| ||||||||||||||| |||| | ||||||||||| ||||||||| ||| |||||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
5600597 |
agccctatgatccacttatacagcagtttaaattcacaacttagtcttttaaggcatttttctcaaaacagcttaactgacaagttatgccctctaaaca |
5600696 |
T |
|
| Q |
120 |
attcaatttcaactcaaattttccagaa |
147 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
5600697 |
attcaatttctgctcaaattttccagaa |
5600724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 28023212 - 28023262
Alignment:
| Q |
117 |
acaattcaatttcaactcaaattttccagaatcaaagaaaatatgtataca |
167 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
28023212 |
acaattcaatttctattctaattttccagaatcaaagaaaacatgtataca |
28023262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 28 - 377
Target Start/End: Complemental strand, 44193102 - 44192747
Alignment:
| Q |
28 |
atgaaccacttatacagcaggttaa-tccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaa |
125 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||| |||||||||| ||| |||||||||||| || ||| ||||||||||||| ||| ||||| |
|
|
| T |
44193102 |
atgaaccacttatacagcattttaaattcacaacttagtcatttaaggcatttttctcaaaacagcttaactaacaacttatgacctctaaacagttcaa |
44193003 |
T |
|
| Q |
126 |
tttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaataa-tcaaatat |
224 |
Q |
| |
|
|||||| |||||||||||||| ||||| || | ||||||| |||| | ||| ||| | |||||| ||| || |||| || | |||| || || | ||| |
|
|
| T |
44193002 |
tttcaattcaaattttccagagtcaaataatacatgtataaacagatcctaacccatttttacagcaatccttacatgttaacttcaaaaaatcgattat |
44192903 |
T |
|
| Q |
225 |
tgaaacttttggaacaacttatgacttttaggttctagctt-------ttcatttcaaacagcaacaacaacaatactaactaattctactaacagccct |
317 |
Q |
| |
|
||| |||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
44192902 |
ggaagcttttggaacaacttatggcttttagcttctagcttctagcttttcattccaaacagcaacaacaacaata----ctaatgctactaaaagccct |
44192807 |
T |
|
| Q |
318 |
tacctcaatcttagacacttctccctgcttcccac-ttgaatttctacttcaaaacttgaa |
377 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| || |||| |||||||||||||||||||| |
|
|
| T |
44192806 |
tacctcaatctt-gacacttctccttgcttccaactttgagtttctacttcaaaacttgaa |
44192747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 14113764 - 14113696
Alignment:
| Q |
99 |
acagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtataca |
167 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| | ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
14113764 |
acagcttatgccctctaaacaattcaatttctattcaaattttccagaatcaaagcaaacatgtataca |
14113696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 14113832 - 14113776
Alignment:
| Q |
20 |
tcagccccatgaaccacttatacagcaggttaatccacaacttagttatttaaggca |
76 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||| |||||||||||| |||||| ||| |
|
|
| T |
14113832 |
tcagccctatgaatcacttatacagcagcgtaaaccacaacttagtcatttaaagca |
14113776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 4342325 - 4342596
Alignment:
| Q |
22 |
agccccatgaaccacttatacagcaggttaa-tccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagaca |
119 |
Q |
| |
|
||||| |||||||||||| | ||||| |||| | ||||||||||| |||||||||| | | ||||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
4342325 |
agccctatgaaccacttacatagcagtttaaattcacaacttagtcatttaaggcattttgcttaaaacagcttaactgacaacttataccctctaaaca |
4342424 |
T |
|
| Q |
120 |
attcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccagtcttacagaaattctaacatatttaactcaataatca |
219 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| | | |||||||||||||| ||| ||| | ||||| |||||||||| || | ||| ||||| |
|
|
| T |
4342425 |
attcaatttctgttcaaattttccagaagcaaaccatacatgtatacacagctcctaacccatccctacagcaattctaacacgttcattccaaaaatca |
4342524 |
T |
|
| Q |
220 |
aatattgaaacttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaa |
291 |
Q |
| |
|
|| || |||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4342525 |
gttacgaaagcttttgaaacaacttatggcttttagcttctagcttttcattccaaacagcaacaacaacaa |
4342596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 34455580 - 34455444
Alignment:
| Q |
34 |
cacttatacagcaggttaatccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaac |
132 |
Q |
| |
|
||||| ||||||| || ||| ||| |||||| ||||||| ||||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
34455580 |
cacttttacagcaaattgatcaacagcttagtcatttaagacaaaatttccataacagcttaactgacagcttatgacctctaaacaattccatttcaat |
34455481 |
T |
|
| Q |
133 |
tcaaattttccagaatcaaagaaaatatgtatacaca |
169 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||| |
|
|
| T |
34455480 |
tcaaattttccagaatcaaactaaacatatatacaca |
34455444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 42784969 - 42784842
Alignment:
| Q |
22 |
agccccatgaaccacttatacagcaggttaa-tccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagaca |
119 |
Q |
| |
|
||||| |||| ||||||||||||||| |||| | ||||||||||| ||||||||| ||| |||||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
42784969 |
agccctatgatccacttatacagcagtttaaattcacaacttagtcttttaaggcatttttctcaaaacagcttaactgacaatttatgccctctaaaca |
42784870 |
T |
|
| Q |
120 |
attcaatttcaactcaaattttccagaa |
147 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
42784869 |
attcaatttctgctcaaattttccagaa |
42784842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 48478956 - 48479083
Alignment:
| Q |
22 |
agccccatgaaccacttatacagcaggttaa-tccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagaca |
119 |
Q |
| |
|
||||| |||| ||||||||||||||| |||| | ||||||||||| ||||||||| ||| |||||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
48478956 |
agccctatgatccacttatacagcagtttaaattcacaacttagtcttttaaggcatttttctcaaaacagcttaactgacaagttatgccctctaaaca |
48479055 |
T |
|
| Q |
120 |
attcaatttcaactcaaattttccagaa |
147 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
48479056 |
attcaatttctgctcaaattttccagaa |
48479083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 3077844 - 3077693
Alignment:
| Q |
20 |
tcagccccatgaaccacttatacagcaggtt-aatccacaacttagttatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctaga |
117 |
Q |
| |
|
||||||| ||||| || |||||| |||| || ||||||||||||| | |||||||||| ||| ||||||||||| || ||||||||| |||||| | |
|
|
| T |
3077844 |
tcagccctatgaatcaattataccgcagtttgaatccacaacttaatcatttaaggcatttttctaaaaacagcttaactaacagcttataccctctaaa |
3077745 |
T |
|
| Q |
118 |
caattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacaca |
169 |
Q |
| |
|
| |||||||||| ||||||||||||||| |||| ||| |||| |||||| |
|
|
| T |
3077744 |
ccattcaatttctgttcaaattttccagaagcaaaccaaacatgtttacaca |
3077693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 3077624 - 3077575
Alignment:
| Q |
238 |
acaacttatgacttttaggttctagcttttcatttcaaacagcaacaaca |
287 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
3077624 |
acaacttatggcttttaacttctagcttctcattccaaacagcaacaaca |
3077575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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