View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7617_high_9 (Length: 454)

Name: NF7617_high_9
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7617_high_9
NF7617_high_9
[»] chr1 (11 HSPs)
chr1 (1-438)||(51854879-51855317)
chr1 (9-411)||(51858566-51858968)
chr1 (4-419)||(51756437-51756849)
chr1 (53-419)||(51762662-51763032)
chr1 (156-429)||(51381291-51381565)
chr1 (301-380)||(51782790-51782869)
chr1 (319-380)||(51832364-51832425)
chr1 (63-116)||(51377913-51377966)
chr1 (307-378)||(51221203-51221274)
chr1 (307-365)||(51407546-51407604)
chr1 (321-371)||(51829777-51829827)
[»] chr6 (6 HSPs)
chr6 (5-419)||(4743528-4743944)
chr6 (5-418)||(4182684-4183099)
chr6 (320-370)||(24417486-24417536)
chr6 (319-378)||(17368359-17368418)
chr6 (319-369)||(19119065-19119115)
chr6 (319-369)||(19126359-19126409)
[»] chr5 (2 HSPs)
chr5 (319-372)||(23766861-23766914)
chr5 (319-372)||(23816709-23816762)
[»] chr3 (17 HSPs)
chr3 (309-369)||(23234855-23234915)
chr3 (319-378)||(23197005-23197064)
chr3 (322-378)||(9608346-9608402)
chr3 (320-419)||(771499-771598)
chr3 (320-371)||(43991960-43992011)
chr3 (320-370)||(2631358-2631408)
chr3 (319-369)||(23230981-23231031)
chr3 (319-372)||(803217-803270)
chr3 (319-372)||(2696731-2696784)
chr3 (319-372)||(3754599-3754652)
chr3 (319-372)||(4142133-4142186)
chr3 (319-372)||(4157943-4157996)
chr3 (319-372)||(7432053-7432106)
chr3 (322-371)||(13498224-13498273)
chr3 (319-387)||(768328-768396)
chr3 (320-372)||(1891064-1891116)
chr3 (319-371)||(2442039-2442091)
[»] chr7 (1 HSPs)
chr7 (66-115)||(27755976-27756025)
[»] chr4 (2 HSPs)
chr4 (319-372)||(20019771-20019824)
chr4 (319-367)||(20016184-20016232)
[»] chr2 (2 HSPs)
chr2 (343-416)||(33038115-33038188)
chr2 (319-371)||(36577366-36577418)
[»] scaffold1004 (1 HSPs)
scaffold1004 (323-359)||(2155-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (323-359)||(4650-4686)


Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 51855317 - 51854879
Alignment:
Q  1 gaagtcattggtaaccagaaccagcataaaataaataacaagatcataagtacacatagcacaacatctacatcctaatcctgagaaaaaggtgatatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  51855317 gaagtcattggtaaccagaaccagcataaaataaataacaagatcataagttcacatagcacaacatctacatcctaatcctgagaaaaatgtgatatca 51855218  T
Q  101 aacttttaacgtagatttctggaaggtaggcttctggtacgagatcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcata 200  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51855217 aactttcaaagtagatttctggaaggtaggcttctggtacgagatcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcata 51855118  T
Q  201 gacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51855117 gacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcct 51855018  T
Q  301 cccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctcactactagaaaaagtgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51855017 cccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctcactactagaaaaagtgc 51854918  T
Q  401 acaaacaatccttcaaca-ctccaaggtaaggcgatttg 438  Q
    ||||||||||| |||||| | ||||||||| ||||||||    
T  51854917 acaaacaatccctcaacacccccaaggtaatgcgatttg 51854879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 51858968 - 51858566
Alignment:
Q  9 tggtaaccagaaccagcataaaataaataacaagatcataagtacacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaactttta 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| ||||||||||||| ||| |    
T  51858968 tggtaaccagaacaagcataaaataaataacaagatcataagttcacatagcacaacatctacatcttaatactgagaaagaggtgatatcaaagtttca 51858869  T
Q  109 acgtagatttctggaaggtaggcttctggtacgagatcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagcca 208  Q
    | ||||| ||||||||||||| |||||  ||| |||||||||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||    
T  51858868 atgtagacttctggaaggtagacttcttttaccagatcatggatattgttttgaatttcaggaatcttcaatgtatcattaatggaatcatagacagcca 51858769  T
Q  209 aactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctcccatttg 308  Q
    | ||||| |||||  |||||||||||||  |||||| | || ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  51858768 acctaaatttccctctcttgaaaaaatatatcagcattaggccatcttcagatatatataatactttggtatagatataacaaccacaacctcccatttg 51858669  T
Q  309 aggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctcactactagaaaaagtgcacaaacaa 408  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||  ||||||| ||||||| |||    
T  51858668 aggaacacttaacaatttagtccaagattctacatttccatattccttcatgatccaaacatcagaaaacttgtcactatgagaaaaaatgcacaagcaa 51858569  T
Q  409 tcc 411  Q
    |||    
T  51858568 tcc 51858566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 4 - 419
Target Start/End: Original strand, 51756437 - 51756849
Alignment:
Q  4 gtcattggtaaccagaaccagcataaaataaataacaagatcataagtacacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaac 103  Q
    |||||||||||||||||  ||||||||  ||||||||||| ||||||| ||||| |||||||||||| |||||||| |||||| ||||||||||||||||    
T  51756437 gtcattggtaaccagaaaaagcataaatcaaataacaagaccataagttcacattgcacaacatctaaatcctaatactgagataaaggtgatatcaaac 51756536  T
Q  104 ttttaacgtagatttctggaaggtaggcttctggtacga---gatcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcata 200  Q
    | | || || || |||||||| | |  |||| ||||  |   ||||||| || ||||||||   | |||||||||| ||||||||||  |||||||||||    
T  51756537 tctcaaagtggacttctggaatgcaaacttcaggtatcatcagatcatgaatgttgttttgggcttcaggaatcttaaaagtatcatttatggaatcata 51756636  T
Q  201 gacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcct 300  Q
    || |||||||||||| || ||| |||| | ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||  | |      |    
T  51756637 gaaagccaaactaaattttcccctcttcacaaaatacatcagcacttggtcatcctcagaaatatataatggtttggtatagatataatgatc------t 51756730  T
Q  301 cccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctcactactagaaaaagtgc 400  Q
    |||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||| |||||   ||||||| |||    
T  51756731 cccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactttgagaaaaaatgc 51756830  T
Q  401 acaaacaatccttcaacac 419  Q
    ||||||||||| |||||||    
T  51756831 acaaacaatccctcaacac 51756849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 53 - 419
Target Start/End: Original strand, 51762662 - 51763032
Alignment:
Q  53 cacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtagatttctggaaggtaggcttctggtacga---gatcatg 149  Q
    ||||||||||| |||||||||||||||  ||| ||||||||||||||||||| | |||||||| |||  ||| | ||  |  |||||  |   |||||||    
T  51762662 cacatagcacagcatctacatcctaatattgaaaaaaaggtgatatcaaactctcaacgtagacttccagaatgcagaataatggtatcaacggatcatg 51762761  T
Q  150 gatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttgg 249  Q
     || ||||||||||||  ||||||||| ||||||||||  |||||| |||||||| |||||||||| ||||||||||| | || |||| |||||||||||    
T  51762762 aatgttgttttgaattttaggaatcttaaaagtatcatttatggaaccatagacaaccaaactaaatttccccatcttcagaatatacatcagcacttgg 51762861  T
Q  250 tcatcttcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccat 349  Q
    ||||||||||||||||||||||  |||||  ||  |||| ||||||   |||| ||||||||||||| |||||||||||||||||||| | |||||||||    
T  51762862 tcatcttcagatatatataatgccttggttaaggaataaaaaccacgatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccat 51762961  T
Q  350 attctttcatgatccaaacatcagaaaacttctcactactag-aaaaagtgcacaaacaatccttcaacac 419  Q
    |||| ||||||||||||| || ||||||  | |||||| ||| ||||| |||||||||||||| |||||||    
T  51762962 attccttcatgatccaaaaataagaaaagctgtcactattagaaaaaaatgcacaaacaatccctcaacac 51763032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 156 - 429
Target Start/End: Original strand, 51381291 - 51381565
Alignment:
Q  156 gttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatct 255  Q
    |||||||||| |||||||||||||||||||||   ||||||||||||||  |||||| || ||||||||||| | ||| | | |||  ||||||||||||    
T  51381291 gttttgaatttcaggaatcttcaaagtatcatttttggaatcatagacaagcaaactgaatttccccatctttagaaactgcatcaaaacttggtcatct 51381390  T
Q  256 tcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccatattctt 355  Q
    || || ||||||| ||  | |  ||||  |  | ||||||  ||| |||| | ||||| ||  ||||||||||||||||| ||| |||||||||||||||    
T  51381391 tccgaaatatatactgactggcaatagccaagaaaaccacgaccttccatgtaaggaatactgaacaatttagtccaagactcttcatttccatattctt 51381490  T
Q  356 tcatgatccaaacatcagaaaacttctcactactagaaaaagtgcacaaacaatccttcaaca-ctccaaggtaa 429  Q
    |||| ||||||| |||||||||||| || | |  |||||   |||||||||||||| |||||| |||||||||||    
T  51381491 tcataatccaaatatcagaaaacttgtcgccatgagaaaggatgcacaaacaatccctcaacacctccaaggtaa 51381565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 51782869 - 51782790
Alignment:
Q  301 cccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaactt 380  Q
    ||||||| |||||||| ||| |||||| ||||||||| | ||||||||||||| ||||| |||||||||||| |||||||    
T  51782869 cccattttaggaacacttaataatttattccaagattgttcatttccatattccttcataatccaaacatcataaaactt 51782790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 51832425 - 51832364
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaactt 380  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||||| ||| ||||||||    
T  51832425 aacaatttagtccaagattgttcatttccatattctttcattatccaaatatcggaaaactt 51832364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 51377913 - 51377966
Alignment:
Q  63 aacatctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtagat 116  Q
    |||||||||||||||||  |||||||||||||| |||||||| | |||||||||    
T  51377913 aacatctacatcctaatattgagaaaaaggtgagatcaaactctcaacgtagat 51377966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 51221203 - 51221274
Alignment:
Q  307 tgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaac 378  Q
    |||||||| | ||||||| |||||||||| | | |||| || ||||| ||||| ||||||||||||||||||    
T  51221203 tgaggaacccgtaacaatatagtccaagaattttcattcccgtattcattcattatccaaacatcagaaaac 51221274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 51407546 - 51407604
Alignment:
Q  307 tgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatcca 365  Q
    |||||||||| |||||||||||||||||| | | |||| |||||||| ||||| |||||    
T  51407546 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 51407604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 51829827 - 51829777
Alignment:
Q  321 caatttagtccaagattctacatttccatattctttcatgatccaaacatc 371  Q
    ||||||| |||||||||   ||||||||||||||||||| |||||||||||    
T  51829827 caatttaatccaagattggtcatttccatattctttcattatccaaacatc 51829777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 5 - 419
Target Start/End: Original strand, 4743528 - 4743944
Alignment:
Q  5 tcattggtaaccagaaccagcataaaataaataacaagatcataagtacacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaact 104  Q
    |||||| |||||||||| || ||||| ||||||||||| |||||  | |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4743528 tcattgttaaccagaacaagtataaa-taaataacaagttcatagtttcacatagcacaacatctacatcctaatcctgaaaaaaaggtgatatcaaact 4743626  T
Q  105 tttaacgtagatttctggaaggtaggcttctggtacga---gatcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatag 201  Q
     | || |||||  | |||||  |||  |  |  | | |   || | ||||| |||  ||||||| ||||||||||  |||||||||  ||||||||||||    
T  4743627 ctcaatgtagacgtatggaaaatagaatcttccttccatcggaacttggatgttgccttgaatttcaggaatcttataagtatcatttatggaatcatag 4743726  T
Q  202 acagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctc 301  Q
    |||||||||||||| |||| | |||| | ||||||| |||||||||||||||  ||||| |||||||||||||| ||  |||||||   |  |    |||    
T  4743727 acagccaaactaaatttcctcctcttcataaaatacatcagcacttggtcatgctcagaaatatataatggtttagttaagatatatatataagcatctc 4743826  T
Q  302 ccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctcactactagaaaaagtgca 401  Q
    ||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||| ||||    
T  4743827 ccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattagaaaaaatgca 4743926  T
Q  402 caaacaatccttcaacac 419  Q
    |||||||||| |||||||    
T  4743927 caaacaatccctcaacac 4743944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 5 - 418
Target Start/End: Original strand, 4182684 - 4183099
Alignment:
Q  5 tcattggtaaccagaaccagcataaaataaataacaagatcataagtacacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaact 104  Q
    |||||| |||||||||| || ||||| ||||||||||| |||||  | |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4182684 tcattgttaaccagaacaagtataaa-taaataacaagttcatagtttcacatagcacaacatctacatcctaatcctgaaaaaaaggtgatatcaaact 4182782  T
Q  105 tttaacgtagatttctggaaggtaggcttctggtacga---gatcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatag 201  Q
     | || |||||  | |||||  |||  |  |  | | |   || | ||||| |||  ||||||| ||||||||||  |||||||||  ||||||||||||    
T  4182783 ctcaatgtagacgtatggaaaatagaatcttccttccatcggaacttggatgttgccttgaatttcaggaatcttataagtatcatttatggaatcatag 4182882  T
Q  202 acagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctc 301  Q
    |||||||||||||| |||| | |||| | ||||||| |||||||||||||||  ||||| |||||||||||||| ||  |||||||   |  |    |||    
T  4182883 acagccaaactaaatttcctcctcttcataaaatacatcagcacttggtcatgctcagaaatatataatggtttagttaagatatatatataagcatctc 4182982  T
Q  302 ccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctcactactagaaaaagtgca 401  Q
    ||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||| ||||    
T  4182983 ccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattagaaaaaatgca 4183082  T
Q  402 caaacaatccttcaaca 418  Q
    |||||||||| ||||||    
T  4183083 caaacaatccctcaaca 4183099  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 24417486 - 24417536
Alignment:
Q  320 acaatttagtccaagattctacatttccatattctttcatgatccaaacat 370  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 17368418 - 17368359
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaac 378  Q
    |||||||||||||||||  || |||||||||| |||||||| | |||||||||| |||||    
T  17368418 aacaatttagtccaagacccttcatttccatactctttcatcagccaaacatcaaaaaac 17368359  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaaca 369  Q
    ||||||||||||||||| ||| ||||||||||||| ||||| | |||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaaca 369  Q
    ||||||||||||||||| ||| ||||||||||||| ||||| | |||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 23766861 - 23766914
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    ||||||||||||||||| |||  |||||||||||||||||| ||||||||||||    
T  23766861 aacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 23816709 - 23816762
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    ||||||||||||||||| |||  |||||||||||||||||| ||||||||||||    
T  23816709 aacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 23234855 - 23234915
Alignment:
Q  309 aggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaaca 369  Q
    ||||||||  ||||||||||||||||| ||||| ||||||||||||||||| | |||||||    
T  23234855 aggaacacgaaacaatttagtccaagactctacgtttccatattctttcatcagccaaaca 23234915  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 23197064 - 23197005
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaac 378  Q
    ||||||||||||||||||||| ||||||||||||| ||||| | |||||||  |||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcatcagccaaacactagaaaac 23197005  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 9608346 - 9608402
Alignment:
Q  322 aatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaac 378  Q
    |||||||||||||| |||| |||||||||||| ||||| | |||||||||| |||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaac 9608402  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 771499 - 771598
Alignment:
Q  320 acaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctcactactagaaaaagtgcacaaacaatccttcaacac 419  Q
    |||||||||||||||| |||  |||||||||||| ||||| | |||||||||  ||||| | |||| | | | |||| ||||||| ||||| ||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaacatatcacaatttgcaaaaatgcacaagcaatctttcaacac 771598  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 43992011 - 43991960
Alignment:
Q  320 acaatttagtccaagattctacatttccatattctttcatgatccaaacatc 371  Q
    ||||||| |||||||| |||| |||||||||||| ||||| |||||||||||    
T  43992011 acaatttggtccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
Q  320 acaatttagtccaagattctacatttccatattctttcatgatccaaacat 370  Q
    |||||||||||||||| |||  |||||||||||| ||||| ||||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 23230981 - 23231031
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaaca 369  Q
    ||||||||| ||||||| ||| ||||||||||||||||||| | |||||||    
T  23230981 aacaatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 803217 - 803270
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    ||||| ||||||||||| |||  |||||||||||||||||| | ||||||||||    
T  803217 aacaacttagtccaagactctttatttccatattctttcataacccaaacatca 803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 2696731 - 2696784
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    ||||||||| ||||||| |||  |||||||||||| ||||| ||||||||||||    
T  2696731 aacaatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 3754652 - 3754599
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    ||||||||||||||||| |||  |||||||||||| ||||| | ||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaacatca 3754599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 4142133 - 4142186
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    ||||||||||||||||| |||  |||||||||||| ||||| | ||||||||||    
T  4142133 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 4157943 - 4157996
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    ||||||||||||||||| |||  |||||||||||| ||||| | ||||||||||    
T  4157943 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 7432053 - 7432106
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    |||||||||||||| ||||||  |||||||||||| |||||  |||||||||||    
T  7432053 aacaatttagtccacgattctttatttccatattccttcatactccaaacatca 7432106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  322 aatttagtccaagattctacatttccatattctttcatgatccaaacatc 371  Q
    |||||||||||||| |||  |||||||||||| ||||| |||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 768328 - 768396
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctcacta 387  Q
    ||||||||||||||||| ||| ||||||| || || ||||| |||||||||| | ||||| | ||||||    
T  768328 aacaatttagtccaagactcttcatttccgtactcattcataatccaaacattaaaaaacatttcacta 768396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 1891064 - 1891116
Alignment:
Q  320 acaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    |||||||||||||||| |||  |||||||| ||| ||||| ||||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatca 1891116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 2442091 - 2442039
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatc 371  Q
    ||||||||||||||||| |||  ||||||||| || ||||| |||||||||||    
T  2442091 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 27756025 - 27755976
Alignment:
Q  66 atctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtaga 115  Q
    ||||||||||||||   ||||| ||||||||||||||||||||| |||||    
T  27756025 atctacatcctaatgacgagaacaaggtgatatcaaacttttaatgtaga 27755976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 20019771 - 20019824
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 372  Q
    ||||||||||||||||| |||  | |||||||||| ||||||| ||||||||||    
T  20019771 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 20019824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 20016184 - 20016232
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaa 367  Q
    ||||||||||||||||| |||  | |||||||||| |||||||||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 416
Target Start/End: Complemental strand, 33038188 - 33038115
Alignment:
Q  343 tttccatattctttcatgatccaaacatcagaaaacttctcactactagaaaaagtgcacaaacaatccttcaa 416  Q
    ||||||||||| ||||| |||||||||||| ||||| | |||||||| | |||  ||||||| |||||| ||||    
T  33038188 tttccatattccttcataatccaaacatcaaaaaacatatcactacttgcaaagatgcacaagcaatccctcaa 33038115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  319 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatc 371  Q
    ||||||||| ||||||| |||  |||||||||||| ||||| |||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 2191 - 2155
Alignment:
Q  323 atttagtccaagattctacatttccatattctttcat 359  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  2191 atttagtccaagactctacatttccatattccttcat 2155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 4686 - 4650
Alignment:
Q  323 atttagtccaagattctacatttccatattctttcat 359  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  4686 atttagtccaagactctacatttccatattccttcat 4650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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