View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7617_low_1 (Length: 719)

Name: NF7617_low_1
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7617_low_1
NF7617_low_1
[»] chr1 (19 HSPs)
chr1 (20-698)||(48179339-48180017)
chr1 (25-233)||(47873854-47874062)
chr1 (72-232)||(40140972-40141136)
chr1 (78-212)||(2417749-2417886)
chr1 (76-225)||(40027189-40027337)
chr1 (76-233)||(49287413-49287567)
chr1 (18-222)||(33860546-33860750)
chr1 (18-222)||(33920173-33920377)
chr1 (78-213)||(37847219-37847359)
chr1 (22-222)||(45196748-45196954)
chr1 (15-231)||(49440278-49440494)
chr1 (156-238)||(41186128-41186210)
chr1 (22-147)||(49540497-49540622)
chr1 (303-382)||(47874091-47874169)
chr1 (132-205)||(49540418-49540491)
chr1 (419-519)||(40141210-40141310)
chr1 (303-382)||(41186233-41186312)
chr1 (303-378)||(49440175-49440250)
chr1 (21-54)||(40027131-40027164)
[»] chr3 (3 HSPs)
chr3 (21-224)||(14964282-14964485)
chr3 (157-223)||(540434-540500)
chr3 (157-225)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (72-213)||(32347364-32347505)
[»] chr5 (3 HSPs)
chr5 (72-215)||(31266823-31266969)
chr5 (156-197)||(1204363-1204404)
chr5 (275-336)||(43156051-43156112)
[»] chr6 (3 HSPs)
chr6 (157-220)||(34606051-34606114)
chr6 (157-220)||(34727328-34727391)
chr6 (157-220)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 655; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 20 - 698
Target Start/End: Original strand, 48179339 - 48180017
Alignment:
Q  20 tgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179339 tgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcagtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattac 48179438  T
Q  120 gcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179439 gcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttat 48179538  T
Q  220 tgtacaacgtgttatttttcctaaaacaaaaaatttgcttattgtacaccgtttaacttgtggtctctgtgttccgaccaatatcctttttgctagccaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48179539 tgtacaacgtgttatttttcctaaaacaaaaaatttgcttattgtacaccgtttaacctgtggtctctgtgttccgaccaatatcctttttgctagccaa 48179638  T
Q  320 taatttgactagagtagaaaaagcttgcaatggtttgtagtttacatattagacaagtattgaaagaaaagaatgcgttgattaattaatattgggaata 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48179639 taatttgactagagtagaaaaagcttgcaatggtttgtagtttacatattagacaagtattgcaagaaaagaatgcgttgattaattaatattgggaata 48179738  T
Q  420 atttagatatgtatcaaaattgaatgtgttggttattaaaaggttgtttacttttggtgttttatgttttcacttttactgataaaataaatattagaaa 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179739 atttagatatgtatcaaaattgaatgtgttggttattaaaaggttgtttacttttggtgttttatgttttcacttttactgataaaataaatattagaaa 48179838  T
Q  520 tgtgctttgaaaatcattatgttactttttactcaattaatttcaactatgatttgatcacgtaatatatttaagaatcatattaccgttcttagaatca 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48179839 tgtgctttgaaaatcattatgttactttttactcaattaatttcaactatgacttgatcacgtaatatatttaagaatcatattaccgttcttagaatca 48179938  T
Q  620 ctctaaacaactttatttgttattgtttggtattgttgcccaaaaaagaaacttagagcaagtgtactctatcataaaa 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  48179939 ctctaaacaactttatttgttattgtttggtattgttgcccaaaaaagaaacttacagtaagtgtactctatcataaaa 48180017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 47873854 - 47874062
Alignment:
Q  25 ggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttc 124  Q
    ||||||||||| ||||||||||||| |||| ||  || |||| |  |||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  47873854 ggatatgagagcaactctgtgtatgccatcagttcttcatctacactatgtagagtgtattcaggggatgataaaaaattgtaaaaatgcattacgcttc 47873953  T
Q  125 cagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtac 224  Q
    |||||| ||||||| ||  |||||  ||||  ||||| |||||||| |||| || |||||| || |||| ||||| ||||||||||||||| ||||||||    
T  47873954 cagctcctcatggatcacattccctgatgttggattgttgttttagacatctacgatatgaggttgatttttctccagttgagtaacttgcatattgtac 47874053  T
Q  225 aacgtgtta 233  Q
    | |||||||    
T  47874054 atcgtgtta 47874062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 40140972 - 40141136
Alignment:
Q  72 atgcagtgtgtattcaggagatgataaaaaa-ttgcaaaaatgcattacgcttccagctcttc---atggaacaagttcccacatgtacgattggtgttt 167  Q
    |||||||||||||||||| |||||||||||| || |||||||| || ||| ||||||||| ||   ||||||||  ||| |||||||  |||||||||||    
T  40140972 atgcagtgtgtattcaggcgatgataaaaaaattacaaaaatgtatcacgtttccagctcctccttatggaacagattctcacatgttggattggtgttt 40141071  T
Q  168 taggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgtt 232  Q
    ||| |||| ||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||    
T  40141072 tagacatctacaatatgaggtagattattctctagttgagtaacttgcatgttgtacaccgtgtt 40141136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 2417886 - 2417749
Alignment:
Q  78 tgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttc---atggaacaagttcccacatgtacgattggtgttttaggcat 174  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||   ||||||||  ||| |||||||  |||||||||||||| |||    
T  2417886 tgtgtattcaggggatgataaaaaattgcaaaaatgtagtacgcttccagctcctccgtatggaacagattctcacatgttggattggtgttttagacat 2417787  T
Q  175 caacaatatgaagtagattattctctagttgagtaact 212  Q
    | ||||||||| ||||||||||||  ||||||||||||    
T  2417786 ctacaatatgaggtagattattcttcagttgagtaact 2417749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 40027189 - 40027337
Alignment:
Q  76 agtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatc 175  Q
    |||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| ||||||||||  |||   |||||  ||||| |||||||| | ||    
T  40027189 agtgtgtattcaggggatggtaaaaaattacaaaaatgtattacgcttccagctcctcatggaacattttctagcatgttggattgatgttttagacctc 40027288  T
Q  176 aacaatatgaagtagattattctctagttgagtaacttgcttattgtaca 225  Q
     || || ||| |||||||||||||| |||||||||||||| |||||||||    
T  40027289 tacgat-tgaggtagattattctcttgttgagtaacttgcatattgtaca 40027337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 76 - 233
Target Start/End: Original strand, 49287413 - 49287567
Alignment:
Q  76 agtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatc 175  Q
    ||||||||||  || ||||||||||||||| |||||||||||| |||||||||||   ||| | ||  |||| ||||||  |||||||| ||||| ||||    
T  49287413 agtgtgtatttcggggatgataaaaaattgaaaaaatgcattatgcttccagctc---atgcagcacattcctacatgtttgattggtgatttagacatc 49287509  T
Q  176 aacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgtta 233  Q
     ||||||||| ||||||||||| |||||||||| |||||  |||| |||| |||||||    
T  49287510 tacaatatgaggtagattattccctagttgagtgacttggatattatacaccgtgtta 49287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 33860546 - 33860750
Alignment:
Q  18 cctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcatt 117  Q
    |||||||||||||||||| |||||||||||| |||||  |   || | | |   ||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  33860546 cctgtggggatatgagagcaactctgtgtatatcatcaatcaattttttacaagatgtagtgtgtattcatgagatgataaaaagttgcaaaaatgtatt 33860645  T
Q  118 acgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgctt 217  Q
    ||| || || || || ||||||||||||| | |||||  ||||||||| ||||   || ||   ||||| |||||||||||||||||||||| | ||| |    
T  33860646 acggtttcaactgttgatggaacaagttctctcatgtttgattggtgtattagatgtctacggaatgaaatagattattctctagttgagtagcctgcat 33860745  T
Q  218 attgt 222  Q
    |||||    
T  33860746 attgt 33860750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 33920377 - 33920173
Alignment:
Q  18 cctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcatt 117  Q
    |||||||||||||||||| |||||||||||| |||||  |   || | | |   ||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  33920377 cctgtggggatatgagagcaactctgtgtatatcatcaatcaattttttacaagatgtagtgtgtattcatgagatgataaaaagttgcaaaaatgtatt 33920278  T
Q  118 acgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgctt 217  Q
    ||| || || || || ||||||||||||| | |||||  ||||||||| ||||   || ||   ||||| |||||||||||||||||||||| | ||| |    
T  33920277 acggtttcaactgttgatggaacaagttctctcatgtttgattggtgtattagatgtctacggaatgaaatagattattctctagttgagtagcctgcat 33920178  T
Q  218 attgt 222  Q
    |||||    
T  33920177 attgt 33920173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 37847219 - 37847359
Alignment:
Q  78 tgtgtattcaggagatgataaaaaattgc-----aaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggc 172  Q
    ||||||||||||||||||||| ||||||      |||||||||||||||||| || | | ||||||||||| | ||||| ||  |||||||| ||||| |    
T  37847219 tgtgtattcaggagatgataacaaattgagaaaaaaaaatgcattacgcttctaggtttccatggaacaagattccacaagtttgattggtgatttagac 37847318  T
Q  173 atcaacaatatgaagtagattattctctagttgagtaactt 213  Q
    ||  || ||||||||||||||||| ||||||||||||||||    
T  37847319 atgtacgatatgaagtagattattttctagttgagtaactt 37847359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 45196748 - 45196954
Alignment:
Q  22 tggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgc 121  Q
    |||||||||||| | || ||| |||||| ||||  | |||||||| |  |||| |||| |||||||||  |||||||||||||||||||| ||||||| |    
T  45196748 tggggatatgagtgcaattctatgtatgacatcaatcttttatctacaatatgtagtgcgtattcagggaatgataaaaaattgcaaaaaagcattacac 45196847  T
Q  122 ttc------cagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgc 215  Q
    |||      |||||| | ||| |||||  |     |||| ||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||    
T  45196848 ttctagttccagctcctgatgcaacaatgtgtttgatgttcgattggtgttttagacatcaacaatatgagatagattattctctagttaagtaacttgc 45196947  T
Q  216 ttattgt 222  Q
     ||||||    
T  45196948 atattgt 45196954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 49440494 - 49440278
Alignment:
Q  15 gaacctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgc 114  Q
    |||| |||||||||||||||| || ||||| ||||||||| || |||||||| |   ||| |   |||||||| | || ||||||||||  ||||| | |    
T  49440494 gaacatgtggggatatgagagtaattctgtttatgtcatcagtgttttatctacaacatgtatcatgtattcatgggacgataaaaaatcacaaaagtac 49440395  T
Q  115 attacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttg 214  Q
    || |||||||||  || |||||  ||| | | |  ||||| ||||||||||||||| |||| || | ||||||||||||||||||| ||| |||||||||    
T  49440394 atcacgcttccaaatcctcatgatacaggcttctccatgttcgattggtgttttagacatctacgacatgaagtagattattctctggtttagtaacttg 49440295  T
Q  215 cttattgtacaacgtgt 231  Q
    | ||||| |||| ||||    
T  49440294 catattgcacaatgtgt 49440278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 41186128 - 41186210
Alignment:
Q  156 cgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgttattttt 238  Q
    ||||||||| |||||||||| |||||||||  ||||||||| |||||||||||||||||| |||||||||  |||||| ||||    
T  41186128 cgattggtggtttaggcatctacaatatgagatagattattttctagttgagtaacttgcatattgtacattgtgttactttt 41186210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 49540622 - 49540497
Alignment:
Q  22 tggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgc 121  Q
    |||||||| ||||| |||||| ||||||||||| || ||  |||| |  |||| |||||||||||||| ||||||||||| || ||||||| |||||       
T  49540622 tggggatacgagagcaactctatgtatgtcatccgtcttggatctacaatatgtagtgtgtattcaggtgatgataaaaagtttcaaaaatacattaaaa 49540523  T
Q  122 ttccagctcttcatggaacaagttcc 147  Q
    ||||||||| ||||| ||||||||||    
T  49540522 ttccagctcctcatgaaacaagttcc 49540497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 47874091 - 47874169
Alignment:
Q  303 tcctttttgctagccaataatttgactagagtagaaaaagcttgcaatggtttgtagtttacatattagacaagtattga 382  Q
    ||||||||| | ||||| |||| ||||||||||| |||| ||||  ||||||||||||||  ||||||||||||||||||    
T  47874091 tcctttttgtttgccaa-aattggactagagtaggaaaaacttgttatggtttgtagtttcaatattagacaagtattga 47874169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 49540491 - 49540418
Alignment:
Q  132 tcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttg 205  Q
    ||||||||||||||||  |||||  ||||| ||||||||  ||| || |||||| |||||||||||||||||||    
T  49540491 tcatggaacaagttccttcatgttggattgttgttttagaaatctacgatatgaggtagattattctctagttg 49540418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 519
Target Start/End: Original strand, 40141210 - 40141310
Alignment:
Q  419 aatttagatatgtatcaaaattgaatgtgttggttattaaaaggttgtttacttttggtgttttatgttttcacttttactgataaaataaatattagaa 518  Q
    |||| |||| ||||||| || || |||||||||  ||||  || ||||||||||||| |||||| | |||| | |||||| |||||||||||||| ||||    
T  40141210 aattcagatgtgtatcagaagtgtatgtgttggccattagtagtttgtttacttttgatgttttttatttttatttttaccgataaaataaatatcagaa 40141309  T
Q  519 a 519  Q
    |    
T  40141310 a 40141310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 41186233 - 41186312
Alignment:
Q  303 tcctttttgctagccaataatttgactagagtagaaaaagcttgcaatggtttgtagtttacatattagacaagtattga 382  Q
    ||||||||| | ||||||||||||||||  ||||||||| |||   ||||||| ||||||  |||||| |||||||||||    
T  41186233 tcctttttgtttgccaataatttgactaatgtagaaaaaacttttgatggtttatagtttcaatattatacaagtattga 41186312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 49440250 - 49440175
Alignment:
Q  303 tcctttttgctagccaataatttgactagagtagaaaaagcttgcaatggtttgtagtttacatattagacaagta 378  Q
    ||||||||| | || ||||||||||  | |||||||||| ||||| ||| ||||||||||  ||||||||||||||    
T  49440250 tcctttttgtttgcaaataatttgatcatagtagaaaaaacttgccatgatttgtagtttgaatattagacaagta 49440175  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 40027131 - 40027164
Alignment:
Q  21 gtggggatatgagagaaactctgtgtatgtcatc 54  Q
    ||||||||||||||| ||||||||||||||||||    
T  40027131 gtggggatatgagagtaactctgtgtatgtcatc 40027164  T

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Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 14964282 - 14964485
Alignment:
Q  21 gtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacg 120  Q
    |||||||||||| || |||||||||||||||||| || |||||||| |  |||| ||||||||||| || ||||||||| ||||||||||||||||||||    
T  14964282 gtggggatatgaaagcaactctgtgtatgtcatcagtcttttatctacaatatgtagtgtgtattctggggatgataaacaattgcaaaaatgcattacg 14964381  T
Q  121 cttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 220  Q
    ||||||||||   ||| |||||| | |   |||   |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  14964382 cttccagctccagatgcaacaaggtgcttgatggtagattggtgttttagacatctacaatatgaagtagattattctctagttgagtaatttgcatatt 14964481  T
Q  221 gtac 224  Q
    ||||    
T  14964482 gtac 14964485  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 540500 - 540434
Alignment:
Q  157 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgta 223  Q
    |||||||| ||||  |||||||||||||| || ||||||||||||| |||||||| || ||||||||    
T  540500 gattggtgctttaaacatcaacaatatgaggtggattattctctagatgagtaacatggttattgta 540434  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 485677 - 485609
Alignment:
Q  157 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtaca 225  Q
    |||||||| ||||| |||||||||||||| || |||| ||||| || |||||||| || ||||||||||    
T  485677 gattggtgctttagacatcaacaatatgaggtggatttttctccagatgagtaacatggttattgtaca 485609  T

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Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 32347505 - 32347364
Alignment:
Q  72 atgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttagg 171  Q
    |||| |||| |||||||| |||||||||| ||||||||||||||||| ||||||||||| | |||||| ||| |||| || || |||||||||||||||     
T  32347505 atgccgtgtctattcaggggatgataaaagattgcaaaaatgcattatgcttccagctccttatggaaaaagatccctcaagttcgattggtgttttaga 32347406  T
Q  172 catcaacaatatgaagtagattattctctagttgagtaactt 213  Q
    |||| ||||| |||||||||||||||||||||||| ||||||    
T  32347405 catctacaatctgaagtagattattctctagttgaataactt 32347364  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 72 - 215
Target Start/End: Original strand, 31266823 - 31266969
Alignment:
Q  72 atgcagtgtgtattcaggagatgataaaa---aattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgtttt 168  Q
    ||||| ||| |||||||| ||||||||||   ||||||||||||||||||| |||||| ||| | || |||||||||||   | || ||| | || ||||    
T  31266823 atgcaatgtctattcaggggatgataaaataaaattgcaaaaatgcattacacttccaactcctaatagaacaagttcctttaagttcgactagtatttt 31266922  T
Q  169 aggcatcaacaatatgaagtagattattctctagttgagtaacttgc 215  Q
    ||  ||| || || |||||||||||||||||||||||||||| ||||    
T  31266923 agaaatctacgatctgaagtagattattctctagttgagtaatttgc 31266969  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 1204404 - 1204363
Alignment:
Q  156 cgattggtgttttaggcatcaacaatatgaagtagattattc 197  Q
    ||||||||||||||| |||||||| ||||| |||||||||||    
T  1204404 cgattggtgttttagacatcaacactatgaggtagattattc 1204363  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 43156112 - 43156051
Alignment:
Q  275 acttgtggtctctgtgttccgaccaatatcctttttgctagccaataatttgactagagtag 336  Q
    ||||||| ||| ||||||  |||| || ||||||||||| ||||||||||| ||||||||||    
T  43156112 acttgtgatctttgtgttttgacctatttcctttttgcttgccaataatttaactagagtag 43156051  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 34606051 - 34606114
Alignment:
Q  157 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 220  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| | ||||||||    
T  34606051 gattggtgttttagacatctacaatatgaggtagattatactctcgttgagtagcatgcttatt 34606114  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 34727328 - 34727391
Alignment:
Q  157 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 220  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| | ||||||||    
T  34727328 gattggtgttttagacatctacaatatgaggtagattatactctcgttgagtagcatgcttatt 34727391  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 33465708 - 33465645
Alignment:
Q  157 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 220  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||  ||||||| | ||||||||    
T  33465708 gattggtgttttagacatctacaatatgaggtagattatactctttttgagtagcatgcttatt 33465645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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