View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_11 (Length: 441)
Name: NF7617_low_11
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 35819438 - 35819021
Alignment:
| Q |
7 |
gtatcatagacaaatgtctcttgcattggagatcatttgaagttgagggtgctagtactaatgttttcgatcgtatcacccaaactattgaccatgcaat |
106 |
Q |
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| T |
35819438 |
gtatcatagacaaatgtctcttgcattggagatcatttgaagttgagggtgctagtactaatgttttcgatcgtatcacccaaactattgaccatgcaat |
35819339 |
T |
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| Q |
107 |
taaggtatgaaaagcaaaacttgctcatgctaatgctctttttcttgctccttttcctaacatgtcacttcaagtcactgatatttccatttggacttca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35819338 |
taaggtatgaaaagcaaaacttgctcatgctaatgctctttttcttgctccttttcctaacatgtcacttcaagtcactgatatttccatttggacttca |
35819239 |
T |
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| Q |
207 |
gacccaggatatcaacaatgcttggcctattggttatcccatgcctccaaacttttcttgttactcaaagcaagcggttcttatggaatggctccacaat |
306 |
Q |
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| T |
35819238 |
gacccaggatatcaacaatgcttggcctattggttatcccatgcctccaaacttttcttgttactcaaagcaagcggttcttatggaatggctccacaat |
35819139 |
T |
|
| Q |
307 |
gccactgttcttcatcagcagccctgtttgggaggatgactcaagtaaacatagcttctgttttgaatagattaattcccattgaaaagctttcattttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35819138 |
gccactgttcttcatcagcagccctgtttgggaggatgactcaagtaaacatagcttctgttttgaatagattaattcccattgaaaagctttcattttt |
35819039 |
T |
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| Q |
407 |
caaataatgtgaaataac |
424 |
Q |
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| T |
35819038 |
cagataatgtgaaataac |
35819021 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 47701393 - 47701439
Alignment:
| Q |
7 |
gtatcatagacaaatgtctcttgcattggagatcatttgaagttgag |
53 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
47701393 |
gtatcatatacaaatgcctcttgcattggagatcatttgaagttgag |
47701439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 47701684 - 47701749
Alignment:
| Q |
290 |
tggaatggctccacaatgccactgttcttcatcagcagccctgtttgggaggatgactcaagtaaa |
355 |
Q |
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| T |
47701684 |
tggaatggctcctcaacgccgccgttcttcctcagcaaccctgtttgggaggatgacacaagtaaa |
47701749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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