View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7617_low_12 (Length: 436)

Name: NF7617_low_12
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7617_low_12
NF7617_low_12
[»] chr7 (5 HSPs)
chr7 (19-181)||(7143996-7144158)
chr7 (221-295)||(7144198-7144272)
chr7 (296-354)||(41120826-41120884)
chr7 (296-328)||(5356701-5356733)
chr7 (295-323)||(8291334-8291362)
[»] chr3 (4 HSPs)
chr3 (296-419)||(44497529-44497652)
chr3 (289-412)||(29829940-29830063)
chr3 (295-419)||(2063950-2064074)
chr3 (296-328)||(14539905-14539937)
[»] chr6 (2 HSPs)
chr6 (296-412)||(1606197-1606313)
chr6 (296-331)||(12190872-12190907)
[»] chr8 (3 HSPs)
chr8 (308-421)||(28994192-28994305)
chr8 (296-349)||(16296575-16296628)
chr8 (296-349)||(16304277-16304330)
[»] chr1 (5 HSPs)
chr1 (300-415)||(22049282-22049397)
chr1 (296-349)||(22894339-22894392)
chr1 (382-418)||(48580683-48580719)
chr1 (298-328)||(2351667-2351697)
chr1 (291-323)||(50442496-50442528)
[»] chr2 (5 HSPs)
chr2 (296-419)||(19866977-19867100)
chr2 (296-419)||(19871878-19872001)
chr2 (296-419)||(19876779-19876902)
chr2 (296-419)||(36585660-36585783)
chr2 (382-419)||(19862408-19862445)
[»] chr5 (5 HSPs)
chr5 (295-330)||(14083994-14084029)
chr5 (295-327)||(5323092-5323124)
chr5 (308-352)||(39289023-39289067)
chr5 (308-352)||(39384269-39384313)
chr5 (295-323)||(39384308-39384336)
[»] scaffold0041 (1 HSPs)
scaffold0041 (296-354)||(102265-102323)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 7143996 - 7144158
Alignment:
Q  19 tctgcatatgattttgaggcttttaaagaaaaaatcataattaagttggctgctcaaagaactgctatagaaatgaagttggatgctcagacaaccaagc 118  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||||    
T  7143996 tctgcatatgattttgaggcttttaaagaaaatatcataattgagttggctgctcaaagcacttctacagaaatgaaggtggatgctcagacaaccaagc 7144095  T
Q  119 aagaagcgatggatgaaaagcttaatttgatactcaatctaatgagtagtagaaacacttggg 181  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  7144096 aagaagcgatggatgaaaagcttaatttgataatcaatctgatgagtagtagaaacacttggg 7144158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 7144198 - 7144272
Alignment:
Q  221 gtaactttaatcaacaatattaacgtgtattcaatgcttattctcattatcttttatgcaagctatgtatatatt 295  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||  |||||||||||||||||||||||||||    
T  7144198 gtaactttaatcaacaatattaacttgtatttaatgtttattctcaaaatcttttatgcaagctatgtatatatt 7144272  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 41120884 - 41120826
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtt 354  Q
    ||||||||||||||||||||||||||| ||||| |  | ||||| ||||||||||||||    
T  41120884 taggggtggacatcgggcgggttcgggtccaaagcacccacccagcccaacccgcggtt 41120826  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 5356701 - 5356733
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaa 328  Q
    |||||||||||||| ||||||||||||||||||    
T  5356701 taggggtggacatcaggcgggttcgggcccaaa 5356733  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 8291334 - 8291362
Alignment:
Q  295 ttaggggtggacatcgggcgggttcgggc 323  Q
    |||||||||||||||||||||||||||||    
T  8291334 ttaggggtggacatcgggcgggttcgggc 8291362  T

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Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 296 - 419
Target Start/End: Complemental strand, 44497652 - 44497529
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44497652 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 44497553  T
Q  396 ttgtacgggttcgggtctttcggg 419  Q
    ||||||||||||||||||||||||    
T  44497552 ttgtacgggttcgggtctttcggg 44497529  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 289 - 412
Target Start/End: Complemental strand, 29830063 - 29829940
Alignment:
Q  289 atatatttaggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttctt 388  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29830063 atatatataggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttccacccatttttctt 29829964  T
Q  389 cttcggtttgtacgggttcgggtc 412  Q
    ||||||||||||||||||||||||    
T  29829963 cttcggtttgtacgggttcgggtc 29829940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 419
Target Start/End: Original strand, 2063950 - 2064074
Alignment:
Q  295 ttaggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcgg 394  Q
    ||||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||  ||    |||||||||||||    
T  2063950 ttaggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaaactagcttttcttcttcgg 2064049  T
Q  395 tttgtacgggttcgggtctttcggg 419  Q
    |||| ||||||||||||||||||||    
T  2064050 tttgcacgggttcgggtctttcggg 2064074  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 14539937 - 14539905
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaa 328  Q
    |||||||||||||||||||||||||| ||||||    
T  14539937 taggggtggacatcgggcgggttcggacccaaa 14539905  T

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Target: chr6 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 1606313 - 1606197
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1606313 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 1606214  T
Q  396 ttgtacgggttcgggtc 412  Q
    ||||||||||| |||||    
T  1606213 ttgtacgggtttgggtc 1606197  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 331
Target Start/End: Complemental strand, 12190907 - 12190872
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaacct 331  Q
    ||||||||||||||||||||||||||| ||||||||    
T  12190907 taggggtggacatcgggcgggttcgggtccaaacct 12190872  T

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Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 28994305 - 28994192
Alignment:
Q  308 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttc 407  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28994305 tcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttt 28994206  T
Q  408 gggtctttcgggcc 421  Q
    ||||||||||||||    
T  28994205 gggtctttcgggcc 28994192  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 16296575 - 16296628
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccg 349  Q
    |||||||||||||||||||||||||||||||||    || ||||||||||||||    
T  16296575 taggggtggacatcgggcgggttcgggcccaaagtggcagcccatcccaacccg 16296628  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 16304277 - 16304330
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccg 349  Q
    |||||||||||||||||||||||||||||||||    || ||||||||||||||    
T  16304277 taggggtggacatcgggcgggttcgggcccaaagtggcagcccatcccaacccg 16304330  T

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Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 300 - 415
Target Start/End: Complemental strand, 22049397 - 22049282
Alignment:
Q  300 ggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgt 399  Q
    |||||||||||||||||||| ||||| |||| |||||| |||||||| ||| |||||||| |||  |||||||||| ||||||| |||||||||||||||    
T  22049397 ggtggacatcgggcgggttcaggcccgaaccctcaacctatcccaactcgcagtttgtgtatagagacccatttctgcccatttctcttcttcggtttgt 22049298  T
Q  400 acgggttcgggtcttt 415  Q
    ||  ||||||||||||    
T  22049297 acaagttcgggtcttt 22049282  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 22894339 - 22894392
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccg 349  Q
    |||||||||||||||||||||||||||||||||    || ||||||||||||||    
T  22894339 taggggtggacatcgggcgggttcgggcccaaagtggcagcccatcccaacccg 22894392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 48580683 - 48580719
Alignment:
Q  382 ttttcttcttcggtttgtacgggttcgggtctttcgg 418  Q
    ||||||||||||||||| |||||||||||||||||||    
T  48580683 ttttcttcttcggtttgcacgggttcgggtctttcgg 48580719  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 328
Target Start/End: Original strand, 2351667 - 2351697
Alignment:
Q  298 ggggtggacatcgggcgggttcgggcccaaa 328  Q
    |||||||||||||||||||||||||||||||    
T  2351667 ggggtggacatcgggcgggttcgggcccaaa 2351697  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 50442528 - 50442496
Alignment:
Q  291 atatttaggggtggacatcgggcgggttcgggc 323  Q
    |||| ||||||||||||||||||||||||||||    
T  50442528 atatgtaggggtggacatcgggcgggttcgggc 50442496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 419
Target Start/End: Complemental strand, 19867100 - 19866977
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 395  Q
    |||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||   |    ||||||||||||||    
T  19867100 taggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagcttttcttcttcggt 19867001  T
Q  396 ttgtacgggttcgggtctttcggg 419  Q
    ||| ||||||||||||||||||||    
T  19867000 ttgcacgggttcgggtctttcggg 19866977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 419
Target Start/End: Complemental strand, 19872001 - 19871878
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 395  Q
    |||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||   |    ||||||||||||||    
T  19872001 taggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagcttttcttcttcggt 19871902  T
Q  396 ttgtacgggttcgggtctttcggg 419  Q
    ||| ||||||||||||||||||||    
T  19871901 ttgcacgggttcgggtctttcggg 19871878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 419
Target Start/End: Complemental strand, 19876902 - 19876779
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 395  Q
    |||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||   |    ||||||||||||||    
T  19876902 taggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagcttttcttcttcggt 19876803  T
Q  396 ttgtacgggttcgggtctttcggg 419  Q
    ||| ||||||||||||||||||||    
T  19876802 ttgcacgggttcgggtctttcggg 19876779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 419
Target Start/End: Complemental strand, 36585783 - 36585660
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 395  Q
    |||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||   |    ||||||||||||||    
T  36585783 taggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagcttttcttcttcggt 36585684  T
Q  396 ttgtacgggttcgggtctttcggg 419  Q
    ||| ||||||||||||||||||||    
T  36585683 ttgcacgggttcgggtctttcggg 36585660  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 19862445 - 19862408
Alignment:
Q  382 ttttcttcttcggtttgtacgggttcgggtctttcggg 419  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  19862445 ttttcttcttcggtttgcacgggttcgggtctttcggg 19862408  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 14083994 - 14084029
Alignment:
Q  295 ttaggggtggacatcgggcgggttcgggcccaaacc 330  Q
    ||||||||||||||||||||||||||||||||||||    
T  14083994 ttaggggtggacatcgggcgggttcgggcccaaacc 14084029  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 5323092 - 5323124
Alignment:
Q  295 ttaggggtggacatcgggcgggttcgggcccaa 327  Q
    |||||||||| ||||||||||||||||||||||    
T  5323092 ttaggggtgggcatcgggcgggttcgggcccaa 5323124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 39289023 - 39289067
Alignment:
Q  308 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcgg 352  Q
    ||||||||||||||||||||||| || ||||| || |||||||||    
T  39289023 tcgggcgggttcgggcccaaaccctccacccagccgaacccgcgg 39289067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 39384313 - 39384269
Alignment:
Q  308 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcgg 352  Q
    ||||||||||||||||||||||| || ||||| || |||||||||    
T  39384313 tcgggcgggttcgggcccaaaccctccacccagccgaacccgcgg 39384269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 39384336 - 39384308
Alignment:
Q  295 ttaggggtggacatcgggcgggttcgggc 323  Q
    |||||||||||||||||||||||||||||    
T  39384336 ttaggggtggacatcgggcgggttcgggc 39384308  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 102265 - 102323
Alignment:
Q  296 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtt 354  Q
    ||||||||||||||||||||||||||| ||||| |  | ||||| ||||||||||||||    
T  102265 taggggtggacatcgggcgggttcgggtccaaagcacccacccagcccaacccgcggtt 102323  T

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