View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7617_low_14 (Length: 403)
Name: NF7617_low_14
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 21422576 - 21422947
Alignment:
| Q |
18 |
acttgatccttctggacccttcaatgttcgttgatcggtgagcaatatggtagtactgtgtgcttacttatggctatgatgatgtatggnnnnnnnattt |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||| || | || ||| ||||||||||||| ||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
21422576 |
acttgatccttctggaccattcaatgttcattaaccgatgaacaatatggtagtattgtttacttacttatggctatgatgatgtatggtttttttattt |
21422675 |
T |
|
| Q |
118 |
cctgatatgattttatgttggtttataaggtttgtggttattttaatttctaaagttgtagactctatctcaatgaatacatatgcactgaagaaagatg |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21422676 |
cctgatatgattttatgttggtttacaaggtttgtggttattttaatttctaaagttgtagactctatctcaatgaatacatatgcaccgaagaaagatg |
21422775 |
T |
|
| Q |
218 |
caattttatgttttattgagacttctcccgagtcatttttatgttatgttgtgaatccgattcaaatctttatatatacaaagaccccgaccaaaacata |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21422776 |
caattttatgttttattgagacttgtcccgagtcatttttatgttttgttatgaatccgattcaaatctttatatatacaaagaccccgaccaaaacata |
21422875 |
T |
|
| Q |
318 |
tggttttatgatcagtttattgatgtatagtatatctaaattttgtgtttgtcttcagaaataatgatgtcc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21422876 |
tggttttatgatcagtttattgatgtatagtatatctaaattttgtgtttgtcttcagaaataatgatgtcc |
21422947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 21393262 - 21393318
Alignment:
| Q |
18 |
acttgatccttctggacccttcaatgttcgttgatcggtgagcaatatggtagtact |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21393262 |
acttgatccttctggacccttcaatgttcgttgatcggtgagcaatatggtagtact |
21393318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University