View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7617_low_16 (Length: 399)

Name: NF7617_low_16
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7617_low_16
NF7617_low_16
[»] chr7 (4 HSPs)
chr7 (1-309)||(19795677-19795985)
chr7 (4-260)||(2799368-2799625)
chr7 (250-309)||(19789788-19789847)
chr7 (6-74)||(8266305-8266373)
[»] chr5 (1 HSPs)
chr5 (94-256)||(36020109-36020273)
[»] chr1 (2 HSPs)
chr1 (4-198)||(26628284-26628475)
chr1 (135-213)||(31864304-31864384)
[»] chr4 (2 HSPs)
chr4 (5-86)||(12103046-12103127)
chr4 (4-65)||(25170643-25170704)
[»] chr6 (3 HSPs)
chr6 (165-258)||(21462234-21462330)
chr6 (1-86)||(21462402-21462487)
chr6 (4-86)||(11749264-11749346)
[»] chr8 (1 HSPs)
chr8 (165-260)||(18191311-18191409)
[»] chr3 (1 HSPs)
chr3 (165-257)||(32372157-32372252)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 19795677 - 19795985
Alignment:
Q  1 tatccattctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctccatcattcctaattgtttccatcctccaatgttaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19795677 tatccattctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctccatcattcctaattgtttccatcctccaatgttaaca 19795776  T
Q  101 aattcgaaggaacaaagcctccattggcactctcgattacttagcaagaaattttgaaattacacacacttcactcgtgcttcccagagattcacccctc 200  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19795777 aattcgaaggaacaaagcctccattggcacccttgattacttagcaagaaattttgaaattacacacacttcactcgtgctttccagagattcacccctc 19795876  T
Q  201 acaaatctctcgtgtttcctagaatcaaaacaaaggctctagatgccaattattagcgcaactattgctatcttgctttgcaagtaatcttaatctatgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19795877 acaaatctctcgtgtttcctagaatcaaaacaaaggctctagatgccaattattagcgcaactattgctatcttgctttgcaagtaatcttaatctatgg 19795976  T
Q  301 atggatatt 309  Q
    |||||||||    
T  19795977 atggatatt 19795985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 2799625 - 2799368
Alignment:
Q  4 ccattctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctccatcattcctaattgtttccatcc-tccaatgttaacaaa 102  Q
    |||||||  |||||||||||| | || ||||| ||||| ||||||||||||||||| ||||||| || | || |||||| ||   || |  |||||||||    
T  2799625 ccattctgcaccaattcaagaacttcttgtgcaccaaatagtgacttcatcaatgcactccatcttttccaactgtttctatatatctagggttaacaaa 2799526  T
Q  103 ttcgaaggaacaaagcctccattggcactctcgattacttagcaagaaattttgaaattacacacacttcactcgtgcttcccagaga-ttcacccctca 201  Q
    || ||||||||||| ||||||||   |  |  ||||  | ||||||||||| |||||| ||||| | |||||||||| |||||||||| || | ||||||    
T  2799525 tttgaaggaacaaaacctccattcatatccatgattgttcagcaagaaattatgaaatcacacagatttcactcgtgtttcccagagatttaaaccctca 2799426  T
Q  202 caaatctctcgtgtttcctagaatcaaaacaaaggctctagatgccaattattagcgca 260  Q
    |||||||||| ||||||| ||||||| ||| |||||||  ||||||||||  |||||||    
T  2799425 caaatctctcatgtttcccagaatcagaac-aaggctcatgatgccaattggtagcgca 2799368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 19789788 - 19789847
Alignment:
Q  250 ttattagcgcaactattgctatcttgctttgcaagtaatcttaatctatggatggatatt 309  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  19789788 ttattagcgcagctattgctatgttgctttgcaagtaatcttaatctatggatggatatt 19789847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 8266373 - 8266305
Alignment:
Q  6 attctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctccatcattccta 74  Q
    |||||| |||||||||||| |||||||||||||||| | ||||||||||||||| ||||| | ||||||    
T  8266373 attctccaccaattcaagaccatcatgtgctccaaataatgacttcatcaatgcactccacctttccta 8266305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 256
Target Start/End: Complemental strand, 36020273 - 36020109
Alignment:
Q  94 gttaacaaattcgaaggaacaaagcctccattggcactctcgattacttagcaagaaattttgaaattacacacacttcactcgtgcttcccagagattc 193  Q
    ||||||||||| ||||||||||| |||||||| | || |  |||| || ||||||||||| |||| | |||||||||||||||||| |||||||||||||    
T  36020273 gttaacaaatttgaaggaacaaaacctccattagtacccatgattgctcagcaagaaattctgaattcacacacacttcactcgtgtttcccagagattc 36020174  T
Q  194 -acccctcacaaatctctcgtgtttcctagaatcaaaa-caaaggctctagatgccaattattag 256  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36020173 aacccctcacaaatctctcgtgtttcctagaatcaaaaccaaaggctctagatgccaattattag 36020109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 26628284 - 26628475
Alignment:
Q  4 ccattctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctccatcattcctaattgtttccatcctccaatgttaacaaat 103  Q
    |||||||| |||||||||| | |||| ||||||||||| ||| ||||||||| ||| ||||||| |||| |||||||||||   || | ||| |||| ||    
T  26628284 ccattctccaccaattcaaaaacatcttgtgctccaaaaagtaacttcatcagtgcactccatctttcccaattgtttcca---tctagtgtcaacatat 26628380  T
Q  104 tcgaaggaacaaagcctccattggcactctcgattacttagcaagaaattttgaaattacacacacttcactcgtgcttcccagagattcacccc 198  Q
    | || |||||||| |||||||||| || |  |||| ||   ||||||| | | || || ||||||||||||||||| |||||||| | |||||||    
T  26628381 ttgatggaacaaaacctccattggtacccgtgattgctactcaagaaactcttaattttcacacacttcactcgtgtttcccagaaaatcacccc 26628475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 31864304 - 31864384
Alignment:
Q  135 gattacttagcaagaaattt-tgaaattacacacacttcactcgtgcttcccagagattca-cccctcacaaatctctcgt 213  Q
    |||||||  ||||||| ||| |||||| | |||||||||||||||| |||||| ||||| | |||||||| ||||||||||    
T  31864304 gattactacgcaagaattttctgaaataatacacacttcactcgtgtttcccatagattgatcccctcactaatctctcgt 31864384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 12103046 - 12103127
Alignment:
Q  5 cattctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctccatcattcctaattgtttccatc 86  Q
    ||||||| ||| |||||||| |||| |||||||||||||||| |||||||||||| ||||||| || | |||||||||||||    
T  12103046 cattctccaccgattcaagaacatcttgtgctccaaagagtgtcttcatcaatgcactccatcttttccaattgtttccatc 12103127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 25170704 - 25170643
Alignment:
Q  4 ccattctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctcca 65  Q
    |||||||| ||||||||||||||||| ||||||||||| |   ||||||||||||| |||||    
T  25170704 ccattctccaccaattcaagagcatcttgtgctccaaataacaacttcatcaatgcactcca 25170643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 21462330 - 21462234
Alignment:
Q  165 cacacttcactcgtgcttcccagaga-ttcacccctcacaaa-tctctcgtgtttcctagaatcaaaa-caaaggctctagatgccaattattagcg 258  Q
    ||||||||||||||| |||||||| | ||||||||||||||  |||||||||||||| ||||| |||| |  | |||||||||||||||||||||||    
T  21462330 cacacttcactcgtgtttcccagaaaattcacccctcacaatgtctctcgtgtttcccagaatgaaaaacccaagctctagatgccaattattagcg 21462234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 21462487 - 21462402
Alignment:
Q  1 tatccattctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctccatcattcctaattgtttccatc 86  Q
    |||||||||||||||||||||||| |||| || || ||||| |||||| |||||||||| ||||| | |||| |||| || |||||    
T  21462487 tatccattctcaaccaattcaagaacatcttgcgcgccaaatagtgacctcatcaatgcactccacctttcccaattcttcccatc 21462402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 11749264 - 11749346
Alignment:
Q  4 ccattctcaaccaattcaagagcatcatgtgctccaaagagtgacttcatcaatgctctccatcattcctaattgtttccatc 86  Q
    |||||||| |||||||||||| |||| ||||||||||| |  |||||||||||||| ||||| | |||| | || ||||||||    
T  11749264 ccattctccaccaattcaagaacatcttgtgctccaaacaacgacttcatcaatgcactccacctttcccagttctttccatc 11749346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 18191409 - 18191311
Alignment:
Q  165 cacacttcactcgtgcttcccagaga-ttcacccctcacaa-atctctcgtgtttcctagaatcaaaa-caaaggctctagatgccaattattagcgca 260  Q
    ||||||||||||||| |||| ||| | ||||||| |||||| ||||||||||||||| ||||| |||| | || ||||| |||||||||||||||||||    
T  18191409 cacacttcactcgtgtttcctagaaaattcacccatcacaatatctctcgtgtttcccagaatgaaaaaccaaagctcttgatgccaattattagcgca 18191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 32372157 - 32372252
Alignment:
Q  165 cacacttcactcgtgcttcccagag-attcacccctcacaaat-ctctcgtgtttcctagaatcaaaaca-aaggctctagatgccaattattagc 257  Q
    ||||||||||||||| |||| |||  ||||||||||||||| | |||||||||||||  |||| |||||  ||||| |||||||||||||||||||    
T  32372157 cacacttcactcgtgtttcctagaatattcacccctcacaattactctcgtgtttccctgaatgaaaacccaaggccctagatgccaattattagc 32372252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University