View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_17 (Length: 393)
Name: NF7617_low_17
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_17 |
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| [»] scaffold2055 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 30225280 - 30225657
Alignment:
| Q |
1 |
aatataaatacaaagtatgtataagaaaatctatgtttcagatcagaccatgcatatttcctaaagaaaacttcaaaaatgcaaagaggaatatttgtag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30225280 |
aatataaatacaaagtatgtataagaaaatctatgtttcagatcagaccatgcatatttcctaaagaaaactttaaaaatgcaaagaggaatatttgtag |
30225379 |
T |
|
| Q |
101 |
taaataacatatataatcttatccccactaatcgtaattcctggatccttcttatgtattttgcaattaattttttgtggatatctcggagatctccata |
200 |
Q |
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| T |
30225380 |
taaataacatatataatcttatccccactaatcgtaattcctggatccttcatatgtattttgcaattaattttttgtggatatctcggagatctccata |
30225479 |
T |
|
| Q |
201 |
gctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattcttaatacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30225480 |
gctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattcttaatacat |
30225579 |
T |
|
| Q |
301 |
tcatgtagctaataattgtaatgtttacattctgcaacaacaaataacaagtaaagcatgttagaactcgagttaatt |
378 |
Q |
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| T |
30225580 |
tcatgtagctaataattgtaatgtttacattctgcaacaacaaacaagaagtaaagcatgttagaactcgagttaatt |
30225657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 30028635 - 30028783
Alignment:
| Q |
194 |
ctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattctt |
293 |
Q |
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| T |
30028635 |
ctccatagctgctttggatatgattgcagctgctttctcaatgcagaacttcaatttatattcatctatgaaccccttttgggttttcatagcgattctt |
30028734 |
T |
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| Q |
294 |
aatacattcatgtagctaataattgtaatgtttacattctgcaacaaca |
342 |
Q |
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| T |
30028735 |
aatattttctcgtagctaataattgtaattgttaaattctgcatcaaca |
30028783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 30044904 - 30045052
Alignment:
| Q |
194 |
ctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattctt |
293 |
Q |
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|||||||||||||| |||||||| | |||||||||| ||||||||||||||||| | |||||||||||| |||||| ||||||||| | ||||||| |
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| T |
30044904 |
ctccatagctgctttggatatgattgcagctgctttctcaatgcagaacttcaatttatattcatctatgaaccccttttgggttttcatagcgattctt |
30045003 |
T |
|
| Q |
294 |
aatacattcatgtagctaataattgtaatgtttacattctgcaacaaca |
342 |
Q |
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| T |
30045004 |
aatattttctcgtagctaataattgtaattgttaaattctgcatcaaca |
30045052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 30222532 - 30222383
Alignment:
| Q |
189 |
gagatctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtga |
288 |
Q |
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||||||||||||||||||| | ||||||||| ||||||||||| |||||||| || ||||| ||||||| ||||| || || | ||| |||| |||| |
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| T |
30222532 |
gagatctccatagctgctttgaatatgacttcaactgctttctccatgcagaatttgaatttccgttcatcaatgaaccctttcaatgttctcaatgtga |
30222433 |
T |
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| Q |
289 |
ttcttaatacattcatgtagctaataattgtaatgtttacattctgcaac |
338 |
Q |
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| T |
30222432 |
ttcttaatattttcacatagctcataattgtaatgtctacattctgcaac |
30222383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 30056650 - 30056778
Alignment:
| Q |
194 |
ctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattctt |
293 |
Q |
| |
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|||||||||||||| | |||||| || ||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||||||||| || ||||||| |
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| T |
30056650 |
ctccatagctgctttgaatatgatttcagatgctttctcaatgtagaacttcaatttatgttcatctatgaaccccttttgggttttcatggcgattctt |
30056749 |
T |
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| Q |
294 |
aatacattcatgtagctaataattgtaat |
322 |
Q |
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| T |
30056750 |
aatattttctcgtagctaataattgtaat |
30056778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold2055
Description:
Target: scaffold2055; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 80 - 208
Alignment:
| Q |
194 |
ctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattctt |
293 |
Q |
| |
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|||||||||||||| | |||||| || |||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||||||||| || ||||||| |
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| T |
80 |
ctccatagctgctttgaatatgatttcagctgctttctcaatgtagaacttcaatttatgttcatctatgaaccccttttgggttttcatggcgattctt |
179 |
T |
|
| Q |
294 |
aatacattcatgtagctaataattgtaat |
322 |
Q |
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|||| || |||||||||||||||||| |
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| T |
180 |
aatattttttcgtagctaataattgtaat |
208 |
T |
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