View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_18 (Length: 392)
Name: NF7617_low_18
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 178 - 374
Target Start/End: Complemental strand, 24424462 - 24424266
Alignment:
| Q |
178 |
taatggtagatggtttgtgtcagtattcctggtaggtaggaaatagaagtcacctacatttctctcaaacttccagtagccttaggacagtcaagtattt |
277 |
Q |
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| T |
24424462 |
taatggtagatggtttgtgtcagtattcctggtaggtaggaaatagaagtcacctacatttctctcaaacttccagtagccttaggacagtcaagtattt |
24424363 |
T |
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| Q |
278 |
tggttgtttcaagtttcactgcctttgacttcgaatccttgcagatatcaataaaacttggtagaaatcgcagatacatagttctcaaggttggaag |
374 |
Q |
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| T |
24424362 |
tgtttgtttcaagtttcactgccttcgacttcaaatcctagcagatatcaataaaacttggtagaaatcgaagatacatagttctcaaggttggaag |
24424266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 24424647 - 24424493
Alignment:
| Q |
1 |
caaagatcacattattcaacttcattgttcacaatgacaatattattttactcacgtcatatcttccctgtcatgaattatatagccatatataaagttc |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24424647 |
caaagatcacattattcaacttcattgttcataatgacaatattattttactcacgtcatatcttccctgtcatgaattatatagccatatataaagttc |
24424548 |
T |
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| Q |
101 |
tcatcatgcaaatgttgttgtttgcaattattatgtttttcaaaacctgtagggg |
155 |
Q |
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| T |
24424547 |
tcatcatgcaaatgttgttgtttgcaattattatgtttttcaaaacctgtagggg |
24424493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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