View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_19 (Length: 370)
Name: NF7617_low_19
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26211665 - 26211437
Alignment:
| Q |
1 |
tatctgcaaacgaacaaagcaaaagcaaaaagcaaagtggtcggttgtttaatcatctttacctttaactttaacctcctctacaacatcatgtttattt |
100 |
Q |
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| T |
26211665 |
tatctgcaaacgaacaaagcaaaagcaaaaagcaaagtggtcggttgtttaatcatctttacctttaactttaacctcctctacaacatcatgtttattt |
26211566 |
T |
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| Q |
101 |
aatgcttctttttcttcctcaaaacacaaaacattaacctttaccaaaccatgttcattcttttatgcaacgnnnnnnnnnnnnacaacctcaaaaagaa |
200 |
Q |
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| T |
26211565 |
aatgcttctttttcttcctcaaaacacaaaacattaacctttaccaaaccatgttcattcttttatgcaacg--tatatatataacaacctcaaaaagaa |
26211468 |
T |
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| Q |
201 |
acattctcattcacgttcctattcaattatt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26211467 |
acattctcattcacgttcctattcaattatt |
26211437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 26211394 - 26211317
Alignment:
| Q |
274 |
tggagatattgtcacaaatgtggtcattgttagggttactaacagttctccaaaacgtacttccaacacagcttctct |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26211394 |
tggagatattgtcacaaatgtggtcattgttagggttactaacagttctccaaaacgtacttccaacacagcttctct |
26211317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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