View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_21 (Length: 358)
Name: NF7617_low_21
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 20995797 - 20995437
Alignment:
| Q |
15 |
aagtaatgaaaaattggaagatggaatgagtgtgtga------cagatacggagaaggaattaaaaccatatgacagnnnnnnnnnaatcttcacttctc |
108 |
Q |
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| T |
20995797 |
aagtaatgaaaaattggaagatggaatgagtgtgtgagtgtgacacatacggagaaggaattaaaaccatatgacagtttttttttaatcttcacttctc |
20995698 |
T |
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| Q |
109 |
tcacatcacggataaagaaactaataaagaaaaa----------caaaagtgtcatgattttagtaacctacaacgagaggttttaacac---------- |
188 |
Q |
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| T |
20995697 |
tcacgtcacagataaagaaactaataaagaaaaataaagaaaaacaaaagtgtcatgattttagtaacctacaacgagaggttttaacacttgttcatgc |
20995598 |
T |
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| Q |
189 |
-atggtaaatcaatttaacaaatgaactacaatattgagatgccatgagtatgcgctaaatgtaagttgttctagtcatggccagcagcctggagtgtag |
287 |
Q |
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| T |
20995597 |
catggtaaatcaatttaacaaatgaactacaatattgagatgccatgagtatgcgctaaatgtaagttgttctagtcatggccagcagcctggagtgtag |
20995498 |
T |
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| Q |
288 |
tgtagcagtaacatgat-aaacgaacaaaactaaatgcagaatcccggtagaagtgaggaa |
347 |
Q |
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| T |
20995497 |
tgtagcagtaacatgataaaacgaacaaaactaaatgcagaatcccgataaaagtgaggaa |
20995437 |
T |
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