View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_24 (Length: 320)
Name: NF7617_low_24
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 25598631 - 25598336
Alignment:
| Q |
14 |
cattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgat |
113 |
Q |
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| T |
25598631 |
cattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgat |
25598532 |
T |
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| Q |
114 |
tgatgcagtattcactgtcccaatgctctcctcttgctcgtattcttgtagtgcagtgcttctttcctgtaagataatcttattaccccaaccaaactcc |
213 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25598531 |
tgatgcagtattcactgtcccaatgctcttctcttgctcgtattcttgtagtgcagtgcttctttcctgtaagataatcttattaccccaaccaaactcc |
25598432 |
T |
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| Q |
214 |
gtttaaaattgtaactacatacactgtaatgtaaacaaattttatatgaatgtttaatcttgtaggactgcaccaagcatcggttttacgtatatt |
309 |
Q |
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| T |
25598431 |
gtttaaaattataactacatacactgtaatgtaaacaaattttatataaatgtctaatcttgtaggactgcaccaagcatcagttttacgtatatt |
25598336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 25588979 - 25588808
Alignment:
| Q |
14 |
cattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25588979 |
cattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgat |
25588880 |
T |
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| Q |
114 |
tgatgcagtattcactgtcccaatgctctcctcttgctcgtattcttgtagtgcagtgcttctttcctgtaa |
185 |
Q |
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| T |
25588879 |
tgatgcagtattcactgtcccaatgctctcctcttgctcgtattcttgtagtgcagtgcttctttcctgtaa |
25588808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 25584138 - 25583961
Alignment:
| Q |
14 |
cattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||| | | || ||||| ||||| |
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| T |
25584138 |
cattttcttcagctgaggctttcaatgcactgactaaaggaggtaggccactctgccgaatctctggtgaattgctgcattcattgggattgtttgtgat |
25584039 |
T |
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| Q |
114 |
tgatgcagtattcactgtcccaatgctctcctcttgctcgtattcttgtagtgcagtgcttctttcctgtaagataat |
191 |
Q |
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| T |
25584038 |
tgattctgtgctcactgtcccaacgctctcgtatttcccatattctggcagtgcaatgcttctttcctgtaaaataat |
25583961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 48465859 - 48465798
Alignment:
| Q |
14 |
cattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagc |
75 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||| || ||||||| |||||| |
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| T |
48465859 |
cattttcttcagctgaggctttcaatgcagagactagaagaggttgggcactctgttgaagc |
48465798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 42076647 - 42076584
Alignment:
| Q |
14 |
cattttcttcagctgaggctttcaatgcac--tgactagaggaggtaggccactctgctgaagc |
75 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||||||| || |||||||||||||| |
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| T |
42076647 |
cattttcttcaagtgaggctttcaatgcacagagactaaaggaggttgggcactctgctgaagc |
42076584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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