View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7617_low_29 (Length: 293)
Name: NF7617_low_29
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 50640409 - 50640673
Alignment:
| Q |
18 |
tgtgacaataaaatatagcatatggataattttgtttgtgacacacaacagccttatcctctgcagttagcttcattaatcctgattttagtgtgtattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50640409 |
tgtgacaataaaatatagcatatggataattttgtttgtgacacacaacagccttatcctctgcagttagcttcattaatcctgattttagtgtgtattt |
50640508 |
T |
|
| Q |
118 |
ctttaaccctgcactcttgttgtctaccaccgtagtagacacaaccttaactcttttcccaagcttcgaaatgctaaaatcaaccatggattcaagcgag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50640509 |
ctttaaccctgcactcttgttgtctaccaccgtagtagacacaaccttaactcttttcccaagcttcgaaatgctaaaatcaaccatggattcaagcgag |
50640608 |
T |
|
| Q |
218 |
gttgcacaatatttttcttcgccttgaatggctgcgtcttcacactcctcaatagtattcttcat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50640609 |
gttgcacaatatttttcttcgccttgaatggctgcgtcttcacactcctcaatagtattcttcat |
50640673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University