View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_30 (Length: 288)
Name: NF7617_low_30
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_30 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 39 - 288
Target Start/End: Original strand, 20254627 - 20254873
Alignment:
| Q |
39 |
ccaccctcaagtgagcagcaaaatgcagctgcttatggaacaatgcacaatagagaaatatgcttttgctacaacaacaaagcaggaaaataatcgctgc |
138 |
Q |
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| T |
20254627 |
ccaccctcaagtgagcagcaaaacgcagctgcttatggaacaatgcacaacagagaaatctacttatgtt---acaacaaaacaggaaaataatttctac |
20254723 |
T |
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| Q |
139 |
accaaaatagcagcagctccgcactcctgtcataaccgtccaaacaacaaccaccaaaggccgctataaacaacgccaatctattacctcatcaaacaat |
238 |
Q |
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| T |
20254724 |
accaaaatagcagcagctccgcactcctgtcataaccgtccgaacagtagccaccaaaggccgctataaacaacgtcaatctattacctcatcaaataat |
20254823 |
T |
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| Q |
239 |
ctcgtggacaccaactccactcgtaaaacatacaagccgaattgttgaat |
288 |
Q |
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| T |
20254824 |
ctcgtggacaccaacaccactcgtagaaaatacaagctggattgttgaat |
20254873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 39845235 - 39845180
Alignment:
| Q |
222 |
ttacctcatcaaacaatctcgtggacaccaactccactcgtaaaacatacaagccg |
277 |
Q |
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| T |
39845235 |
ttacctcaacaaacaatctcgggggcaccaactccattcataaaacatacacgccg |
39845180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 7114944 - 7114997
Alignment:
| Q |
224 |
acctcatcaaacaatctcgtggacaccaactccactcgtaaaacatacaagccg |
277 |
Q |
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| T |
7114944 |
acctcatcaaacaatcccgaggacaccaacaccactcgtagaacatgcaagccg |
7114997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 278
Target Start/End: Original strand, 55854824 - 55854855
Alignment:
| Q |
247 |
caccaactccactcgtaaaacatacaagccga |
278 |
Q |
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| T |
55854824 |
caccaactccactcgtaaaacatacaagccga |
55854855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 52612729 - 52612765
Alignment:
| Q |
241 |
cgtggacaccaactccactcgtaaaacatacaagccg |
277 |
Q |
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| T |
52612729 |
cgtggacaccaactccactcataaaacatacaagccg |
52612765 |
T |
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