View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_34 (Length: 252)
Name: NF7617_low_34
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 44859169 - 44859403
Alignment:
| Q |
1 |
tgtttgtttacagtaataagttcacggaggatgattggaaattggtacaattggtgtttacattatttagaaatatcctagctgttcaagaaatcccgtt |
100 |
Q |
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| T |
44859169 |
tgtttgtttacagtaataagttcacggaggatgattggaaattggtacaattggtgtttacattatttagaaatatcctagctgttcaagaaatcccgtt |
44859268 |
T |
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| Q |
101 |
gcatctgaaatcagcaggatctgctagtcattttttatcgctcagagataaatttctggaacttttgttccgcgagaatgtgatggatataatcttggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44859269 |
gcatctgaaatcagcaggatctgctagtcattttttatcgctcagagataaatttctggaccttttgttccgcgagaatgtgatggatataatcttggtt |
44859368 |
T |
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| Q |
201 |
gtatctcaaaatgttgggagttctaatgtctatct |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44859369 |
gtatctcaaaatgttgggagttctaatgtctatct |
44859403 |
T |
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