View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7617_low_35 (Length: 250)

Name: NF7617_low_35
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7617_low_35
NF7617_low_35
[»] scaffold0470 (1 HSPs)
scaffold0470 (121-245)||(60-184)
[»] chr8 (11 HSPs)
chr8 (121-245)||(6610772-6610896)
chr8 (121-244)||(43633687-43633808)
chr8 (123-237)||(36557109-36557223)
chr8 (121-237)||(21595150-21595266)
chr8 (123-245)||(2955985-2956107)
chr8 (7-60)||(6610658-6610711)
chr8 (10-61)||(43633868-43633919)
chr8 (124-237)||(40977612-40977725)
chr8 (121-208)||(43047996-43048083)
chr8 (121-207)||(22976474-22976560)
chr8 (20-52)||(27424325-27424357)
[»] chr2 (17 HSPs)
chr2 (121-245)||(10355681-10355805)
chr2 (121-245)||(35734525-35734649)
chr2 (121-245)||(16254983-16255107)
chr2 (121-245)||(7759303-7759428)
chr2 (121-245)||(28808735-28808864)
chr2 (123-237)||(16256207-16256321)
chr2 (7-61)||(10355864-10355918)
chr2 (7-61)||(16255167-16255221)
chr2 (7-61)||(35734411-35734465)
chr2 (121-237)||(34210347-34210463)
chr2 (121-236)||(43589809-43589924)
chr2 (7-61)||(28808923-28808977)
chr2 (7-53)||(7759071-7759117)
chr2 (11-53)||(7759119-7759161)
chr2 (10-53)||(7759202-7759245)
chr2 (21-60)||(16256384-16256423)
chr2 (137-208)||(35851671-35851742)
[»] chr1 (23 HSPs)
chr1 (121-245)||(29743475-29743599)
chr1 (121-245)||(11376686-11376810)
chr1 (121-245)||(49622841-49622964)
chr1 (121-245)||(15544491-15544615)
chr1 (121-243)||(42886742-42886864)
chr1 (121-245)||(261672-261795)
chr1 (121-241)||(44565076-44565196)
chr1 (123-245)||(46833228-46833352)
chr1 (121-237)||(51621791-51621907)
chr1 (121-236)||(2326768-2326883)
chr1 (7-61)||(49622727-49622781)
chr1 (7-61)||(261558-261612)
chr1 (7-61)||(2326655-2326709)
chr1 (7-61)||(15544675-15544729)
chr1 (7-61)||(44565256-44565310)
chr1 (7-61)||(51621678-51621732)
chr1 (7-61)||(11376870-11376924)
chr1 (7-60)||(29743658-29743711)
chr1 (7-61)||(46833445-46833499)
chr1 (121-208)||(37661901-37661989)
chr1 (121-236)||(33505744-33505859)
chr1 (10-53)||(42886921-42886964)
chr1 (121-174)||(15429337-15429390)
[»] chr6 (7 HSPs)
chr6 (121-237)||(18227387-18227503)
chr6 (123-234)||(20219057-20219168)
chr6 (123-234)||(22113082-22113193)
chr6 (121-234)||(11455187-11455297)
chr6 (7-53)||(20219243-20219289)
chr6 (7-53)||(22113268-22113314)
chr6 (18-61)||(18227562-18227605)
[»] chr5 (9 HSPs)
chr5 (121-245)||(35384223-35384347)
chr5 (127-243)||(30411399-30411515)
chr5 (121-245)||(1751362-1751486)
chr5 (129-245)||(11726579-11726695)
chr5 (121-245)||(10329701-10329827)
chr5 (7-61)||(35384406-35384460)
chr5 (7-61)||(30411279-30411333)
chr5 (121-237)||(37276019-37276135)
chr5 (121-208)||(37275249-37275336)
[»] chr7 (9 HSPs)
chr7 (121-242)||(29008622-29008743)
chr7 (121-245)||(12313887-12314011)
chr7 (123-245)||(47645490-47645612)
chr7 (121-245)||(1827956-1828080)
chr7 (122-237)||(44119040-44119155)
chr7 (121-245)||(33118699-33118828)
chr7 (7-57)||(29008509-29008559)
chr7 (7-53)||(42027803-42027849)
chr7 (17-53)||(40040517-40040553)
[»] chr4 (21 HSPs)
chr4 (121-241)||(37563795-37563915)
chr4 (121-236)||(38024524-38024639)
chr4 (121-242)||(6885015-6885137)
chr4 (121-242)||(29191031-29191151)
chr4 (121-239)||(55873569-55873687)
chr4 (121-197)||(54975830-54975906)
chr4 (121-245)||(29118961-29119085)
chr4 (121-237)||(49284074-49284189)
chr4 (123-237)||(42739582-42739696)
chr4 (121-237)||(1921220-1921336)
chr4 (123-245)||(47497567-47497690)
chr4 (7-61)||(29191204-29191258)
chr4 (7-61)||(54975965-54976019)
chr4 (121-237)||(22443731-22443847)
chr4 (121-236)||(41279202-41279317)
chr4 (10-61)||(38024414-38024465)
chr4 (135-203)||(8067199-8067268)
chr4 (7-53)||(6884912-6884958)
chr4 (7-61)||(37563973-37564027)
chr4 (123-245)||(39593207-39593329)
chr4 (7-53)||(55873758-55873804)
[»] scaffold0155 (1 HSPs)
scaffold0155 (123-240)||(28057-28174)
[»] chr3 (2 HSPs)
chr3 (121-237)||(46485484-46485600)
chr3 (137-238)||(7311392-7311490)


Alignment Details
Target: scaffold0470 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 60 - 184
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  60 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 159  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| ||||||||| |||||||    
T  160 catatttaattaaaatcccttccct 184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 6610772 - 6610896
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  6610772 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 6610871  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| ||||||||| |||||||    
T  6610872 catatttaattaaaatcccttccct 6610896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 43633808 - 43633687
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  43633808 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 43633709  T
Q  221 catatttgattaaaatctcttccc 244  Q
    |  |||| ||||||||| ||||||    
T  43633708 c--atttaattaaaatcccttccc 43633687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 36557223 - 36557109
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| |||| |||||| |    
T  36557223 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtaaaccaaacata 36557124  T
Q  223 tatttgattaaaatc 237  Q
    |||||||||||||||    
T  36557123 tatttgattaaaatc 36557109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 21595150 - 21595266
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||||  |||||| ||||| | || ||||||    
T  21595150 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctttctcctccccttctgaaccaaaca 21595249  T
Q  221 catatttgattaaaatc 237  Q
     ||||||||||||||||    
T  21595250 tatatttgattaaaatc 21595266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 2956107 - 2955985
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || |||||| |    
T  2956107 aagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctaccctccccttgtgaaccaaacata 2956008  T
Q  223 tatttgattaaaatctcttccct 245  Q
    |||||||||||||||||| ||||    
T  2956007 tatttgattaaaatctctcccct 2955985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 6610658 - 6610711
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaa 60  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  6610658 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaa 6610711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 43633919 - 43633868
Alignment:
Q  10 attattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  43633919 attattttaaaagtgctctaatatttatgaatacctaatattttgttagaac 43633868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 40977725 - 40977612
Alignment:
Q  124 agtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacat 223  Q
    |||||||||| |||||||  ||||| | ||||||  ||| ||||| |||| |||||||| ||||||||||||||| ||| ||||  | || |||||| ||    
T  40977725 agtgaataatttaaaaattgtgatactattttaatattatagggacaaaacagtaatttagttttaaaatccctcccctcccctcgtgaaccaaacatat 40977626  T
Q  224 atttgattaaaatc 237  Q
    ||||||||||||||    
T  40977625 atttgattaaaatc 40977612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 43048083 - 43047996
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 208  Q
    ||||||||||||| |||||||| | ||  | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| |||||    
T  43048083 tgaagtgaataatttaaaaatcgttatgctattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctcccctt 43047996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 22976560 - 22976474
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct 207  Q
    ||||||||||||| | |||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||| ||||||| ||||||||    
T  22976560 tgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaatatccctccccttccct 22976474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 27424325 - 27424357
Alignment:
Q  20 aagtgctctaatatttatgaatacctaatattt 52  Q
    |||||||||||||||||| ||||||||||||||    
T  27424325 aagtgctctaatatttataaatacctaatattt 27424357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 10355805 - 10355681
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  10355805 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 10355706  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| |||||||||||||||||    
T  10355705 catatttaattaaaatctcttccct 10355681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 35734525 - 35734649
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  35734525 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 35734624  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| ||||||||| |||||||    
T  35734625 catatttaattaaaatcccttccct 35734649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 16255107 - 16254983
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  16255107 tgaagtgaataatataaagatcttgatattgtttcaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 16255008  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| ||||||||| |||||||    
T  16255007 catatttaattaaaatcccttccct 16254983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 7759303 - 7759428
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||| ||| ||||||| || |||||    
T  7759303 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaaataatttggttttaaaatctctcccctccccttatgaaccaaac 7759402  T
Q  220 acatatttgattaaaatctcttccct 245  Q
    |||||||| |||||||||||||||||    
T  7759403 acatatttaattaaaatctcttccct 7759428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 28808864 - 28808735
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||     ||| || |    
T  28808864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctcccctccccttatgaacc 28808765  T
Q  216 aaacacatatttgattaaaatctcttccct 245  Q
    |||||||||||| |||||||| ||||||||    
T  28808764 aaacacatatttaattaaaatatcttccct 28808735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 16256321 - 16256207
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | ||||||||| |    
T  16256321 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaatcaaacata 16256222  T
Q  223 tatttgattaaaatc 237  Q
    |||||||||||||||    
T  16256221 tatttgattaaaatc 16256207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 10355918 - 10355864
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10355918 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 10355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 16255221 - 16255167
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16255221 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 16255167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 35734411 - 35734465
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35734411 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 35734465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 34210347 - 34210463
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  34210347 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 34210446  T
Q  221 catatttgattaaaatc 237  Q
     ||||||||||||||||    
T  34210447 tatatttgattaaaatc 34210463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 43589809 - 43589924
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  ||||| ||||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || ||||||    
T  43589809 tgaagtgaataatttaaaaattgtgatactgttttaatattagagggataaaaaagtaatttagttttaaaatctctgccctccccttgtgaaccaaaca 43589908  T
Q  221 catatttgattaaaat 236  Q
      ||||||||||||||    
T  43589909 tgtatttgattaaaat 43589924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 28808977 - 28808923
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  28808977 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaac 28808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 7759071 - 7759117
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7759071 tagattattttagaagtgctctaatatttatgaatacctaatatttt 7759117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 7759119 - 7759161
Alignment:
Q  11 ttattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  7759119 ttattttagaagtgctctaatatttatgaatacctaatatttt 7759161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 7759202 - 7759245
Alignment:
Q  10 attattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  7759202 attattttagaagtgctctgatatttatgaatacctaatatttt 7759245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 16256423 - 16256384
Alignment:
Q  21 agtgctctaatatttatgaatacctaatattttgttagaa 60  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  16256423 agtgctctaatatttatgaatacccaatatcttgttagaa 16256384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 35851742 - 35851671
Alignment:
Q  137 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 208  Q
    |||||||||| ||||||||||  |||||| || |||||||||||||||| || |||||| |  |||||||||    
T  35851742 aaaatcatgagattgttttaatattagagcgataaaaaagtaatttggtgttgaaatcctttcccttccctt 35851671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 29743599 - 29743475
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  29743599 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 29743500  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| ||||||||| |||||||    
T  29743499 catatttaattaaaatcccttccct 29743475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 11376810 - 11376686
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  11376810 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 11376711  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| |||||||||||||||||    
T  11376710 catatttaattaaaatctcttccct 11376686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 49622841 - 49622964
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  49622841 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaataatttggttttaaaatccctct-cttcccttataaaccaaaca 49622939  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| |||||||| ||||||||    
T  49622940 catatttaattaaaatttcttccct 49622964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 15544615 - 15544491
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| || ||||||    
T  15544615 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctcccctccccttatgaaccaaaca 15544516  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| ||||||||| |||||||    
T  15544515 catatttaattaaaatcccttccct 15544491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 42886864 - 42886742
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  42886864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 42886765  T
Q  221 catatttgattaaaatctcttcc 243  Q
    ||||||| ||||||||| |||||    
T  42886764 catatttaattaaaatcccttcc 42886742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 261672 - 261795
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  261672 tgaagtgaataatataaaaatcatgatattgttttaaggttagagg-ataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 261770  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| |||||||||||||||||    
T  261771 catatttaattaaaatctcttccct 261795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 44565196 - 44565076
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||||| || ||||||    
T  44565196 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttgattttaaaatccctcccctccccttatgaaccaaaca 44565097  T
Q  221 catatttgattaaaatctctt 241  Q
    ||||||| ||| |||||||||    
T  44565096 catatttaattgaaatctctt 44565076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 46833352 - 46833228
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaa--gtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| || ||| ||||||| || ||||||    
T  46833352 aagtgaataatagaaaaatcatgatattgttttaaggttagagggataaaaaaaagtaatttggttttaaaatccttcccctccccttatgaaccaaaca 46833253  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| ||||||||| |||||||    
T  46833252 catatttaattaaaatcccttccct 46833228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 51621791 - 51621907
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||||| ||| |||  |||||| || ||||||    
T  51621791 tgaagtgaataatataaaaatcatgatattgttttaagattacagtgataaaaaagtaatttggttttaaaatctctcccctctccttatgaaccaaaca 51621890  T
Q  221 catatttgattaaaatc 237  Q
    ||||||| |||||||||    
T  51621891 catatttaattaaaatc 51621907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 2326768 - 2326883
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||| ||| ||| || |||| |    
T  2326768 tgaagtgaataatataaaaatcataatattgttttaaggttagaggggtaaaaaggtaatttggttttaaaatccctcccctccccgtatgaaccaaata 2326867  T
Q  221 catatttgattaaaat 236  Q
    ||||||| ||||||||    
T  2326868 catatttaattaaaat 2326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 49622727 - 49622781
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622727 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 49622781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 261558 - 261612
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  261558 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 261612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 2326655 - 2326709
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2326655 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 2326709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 15544729 - 15544675
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15544729 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 15544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 44565310 - 44565256
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44565310 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 44565256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 51621678 - 51621732
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51621678 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 51621732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 11376924 - 11376870
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  11376924 tagattattttagaagtgctttaatatttatgaatacctaatattttgttagaac 11376870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 29743711 - 29743658
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaa 60  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  29743711 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaa 29743658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 46833499 - 46833445
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  46833499 tagattattttagaattgttctaatatttatgaatacctaatattttgttagaac 46833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 37661901 - 37661989
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttccctt 208  Q
    ||||||||||||| |||||||| ||||| | ||||||  |||||||||  ||||||||||||| ||||||||||||||| ||| |||||    
T  37661901 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaagtaatttagttttaaaatccctcccctcccctt 37661989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 33505859 - 33505744
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  33505859 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 33505760  T
Q  221 catatttgattaaaat 236  Q
     |||||| ||| ||||    
T  33505759 tatatttaattgaaat 33505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 42886964 - 42886921
Alignment:
Q  10 attattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  42886964 attattttagaagtgctctaatatttatgaatacctaatatttt 42886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 15429390 - 15429337
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaa 174  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||||||| |||||    
T  15429390 tgaagtgaataattttaaaatcatgagattgttttaagattagagggataaaaa 15429337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 18227503 - 18227387
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  18227503 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 18227404  T
Q  221 catatttgattaaaatc 237  Q
    ||||||| |||||||||    
T  18227403 catatttaattaaaatc 18227387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 20219168 - 20219057
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  20219168 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 20219069  T
Q  223 tatttgattaaa 234  Q
    ||||| ||||||    
T  20219068 tatttaattaaa 20219057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 22113193 - 22113082
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  22113193 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 22113094  T
Q  223 tatttgattaaa 234  Q
    ||||| ||||||    
T  22113093 tatttaattaaa 22113082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 11455297 - 11455187
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| ||||||||  |||| | ||||||  ||||||| | ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  11455297 tgaagtgaataatttaaaaatc--gatactattttaatattagagg-ataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 11455201  T
Q  221 catatttgattaaa 234  Q
     |||||||||||||    
T  11455200 tatatttgattaaa 11455187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 20219289 - 20219243
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  20219289 tagattattttagaagtgctctaatatttatgaatacctaatatttt 20219243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 22113314 - 22113268
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22113314 tagattattttagaagtgctctaatatttatgaatacctaatatttt 22113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 18227605 - 18227562
Alignment:
Q  18 agaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  18227605 agaagtgctctaatatttatgaatacctaatattatgtgagaac 18227562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 35384347 - 35384223
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| || |||| || ||||||    
T  35384347 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctcccattatgaaccaaaca 35384248  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| |||||||||||||||||    
T  35384247 catatttaattaaaatctcttccct 35384223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 30411399 - 30411515
Alignment:
Q  127 gaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatt 226  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||| |||||    
T  30411399 gaataatataaaaatcatgatattgttttaaggctagagggataaaaaagtaatttggttttaaaatccatcccattcccttatgaatcaaacatatatt 30411498  T
Q  227 tgattaaaatctcttcc 243  Q
    | |||||||||||||||    
T  30411499 taattaaaatctcttcc 30411515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 1751486 - 1751362
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1751486 tgaagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1751387  T
Q  221 catatttgattaaaatctcttccct 245  Q
     ||||||||||||||||||| ||||    
T  1751386 tatatttgattaaaatctctcccct 1751362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 11726579 - 11726695
Alignment:
Q  129 ataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttg 228  Q
    ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |||||||    
T  11726579 ataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacatatatttg 11726678  T
Q  229 attaaaatctcttccct 245  Q
    |||||||||||| ||||    
T  11726679 attaaaatctctcccct 11726695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 10329701 - 10329827
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaa--aagtaatttggttttaaaatccctctccttcccttataaatcaaa 218  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||  ||||||||| ||||||||||||||| | | ||||| | || ||||    
T  10329701 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaaagtaatttagttttaaaatccctcccatccccttgtgaaccaaa 10329800  T
Q  219 cacatatttgattaaaatctcttccct 245  Q
    || ||||||||||||||||||| ||||    
T  10329801 catatatttgattaaaatctctcccct 10329827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 35384460 - 35384406
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  35384460 tagattattttagaagtgctctaatatttatgaatacctaatattttgttcgaac 35384406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 30411279 - 30411333
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  30411279 tagattattttagaagtgctctaatatttatggatatctaatattttgttagaac 30411333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 37276135 - 37276019
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||| | ||||||||||| ||| ||| ||||| | || |||||     
T  37276135 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatgtagttttaaaatctctcccctccccttgtgaaccaaacc 37276036  T
Q  221 catatttgattaaaatc 237  Q
     |||||||||| |||||    
T  37276035 tatatttgattgaaatc 37276019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 37275249 - 37275336
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 208  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||||| ||||||||||| ||| ||| |||||    
T  37275249 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatttagttttaaaatctctcccctcccctt 37275336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 29008622 - 29008743
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||  || ||||||    
T  29008622 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccgtacgaaccaaaca 29008721  T
Q  221 catatttgattaaaatctcttc 242  Q
    ||||||| ||||||||||||||    
T  29008722 catatttaattaaaatctcttc 29008743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 12313887 - 12314011
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||  ||||||||||||||| ||| ||| | | || ||||||    
T  12313887 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaattcagttttaaaatccctcccctccccctgtgaaccaaaca 12313986  T
Q  221 catatttgattaaaatctcttccct 245  Q
    ||||||| |||||||||||||||||    
T  12313987 catatttaattaaaatctcttccct 12314011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 47645612 - 47645490
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  47645612 aagtgaataatttaaaaatcgtgatactattttaatattaaagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 47645513  T
Q  223 tatttgattaaaatctcttccct 245  Q
    |||||||||||||||||| ||||    
T  47645512 tatttgattaaaatctctcccct 47645490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 1828080 - 1827956
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1828080 tgaagtggataatttaaaaatcgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1827981  T
Q  221 catatttgattaaaatctcttccct 245  Q
     ||||||||||||||||||| ||||    
T  1827980 tatatttgattaaaatctctcccct 1827956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 44119040 - 44119155
Alignment:
Q  122 gaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 221  Q
    |||||||||||| |||||||| ||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| | | ||||| | || ||||||     
T  44119040 gaagtgaataatttaaaaatcgtgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccatccccttctgaaccaaacat 44119139  T
Q  222 atatttgattaaaatc 237  Q
    ||||||||||||||||    
T  44119140 atatttgattaaaatc 44119155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 33118828 - 33118699
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 215  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| || |||||||||| ||||||||||||||| ||| ||||     | | || |    
T  33118828 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataataaagtaatttagttttaaaatccctcccctcccctacccttgtgaacc 33118729  T
Q  216 aaacacatatttgattaaaatctcttccct 245  Q
    ||||| ||||||||||||||||||||||||    
T  33118728 aaacatatatttgattaaaatctcttccct 33118699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 29008509 - 29008559
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgtta 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29008509 tagattattttagaagtgctctaatatttatgaatacctaatattttgtta 29008559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 42027803 - 42027849
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  42027803 tagattattttagaagtgctctaatatttatgaatacctaatatttt 42027849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 40040553 - 40040517
Alignment:
Q  17 tagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  40040553 tagaactgctttaatatttatgaatacctaatatttt 40040517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 37563915 - 37563795
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||| || ||||||    
T  37563915 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctccccttatgaaccaaaca 37563816  T
Q  221 catatttgattaaaatctctt 241  Q
     |||||| |||||||||||||    
T  37563815 tatatttaattaaaatctctt 37563795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 38024524 - 38024639
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||| || |||| || ||||||    
T  38024524 tgaagtgaataatataaaaatcatgatattgttttaaggttagaaggataaaaaagtaatttggttttaaaatctctcccctccctttatgaaccaaaca 38024623  T
Q  221 catatttgattaaaat 236  Q
    ||||||| ||||||||    
T  38024624 catatttaattaaaat 38024639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 6885015 - 6885137
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttag-agggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||||||||| |||| ||||||||||| || |||||    
T  6885015 tgaagtgaataatataaaaatcatgatattgttttaaggttagcacggataaaaaggtaatttgattttaaaattcctccccttcccttatgaaccaaac 6885114  T
Q  220 acatatttgattaaaatctcttc 242  Q
    |||||||| ||||||||| ||||    
T  6885115 acatatttaattaaaatcccttc 6885137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 29191151 - 29191031
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||| || ||||||    
T  29191151 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctc-ccctcccgtatgaaccaaaca 29191053  T
Q  221 catatttgattaaaatctcttc 242  Q
    |||| || ||||||||| ||||    
T  29191052 catacttaattaaaatcccttc 29191031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 55873687 - 55873569
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||  ||| ||||| | || ||||||    
T  55873687 tgaagtgaataatttaaaaatcatgatattattttaagattagagggataaaaaagtaatttggttttaaaatctcttccctccccttgtgaaccaaaca 55873588  T
Q  221 catatttgattaaaatctc 239  Q
    ||||||| |||||||||||    
T  55873587 catatttaattaaaatctc 55873569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 54975906 - 54975830
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccct 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  54975906 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatccct 54975830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 29119085 - 29118961
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||| | ||| | ||||||| ||||||||| ||||||||||||| ||||||||||||||| |||  | || | || ||||||    
T  29119085 tgaagtgaataatttaaaaatcgtaatactattttaagattagagggataaaaaagtaatttagttttaaaatccctcccctctctttgtgaaccaaaca 29118986  T
Q  221 catatttgattaaaatctcttccct 245  Q
     ||||||||||||||||||| ||||    
T  29118985 tatatttgattaaaatctctcccct 29118961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 49284074 - 49284189
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||||||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||| |||| |||| | || ||||||    
T  49284074 tgaagtgaataatttaaaaatcatgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctcccctt-ccttgtgaaccaaaca 49284172  T
Q  221 catatttgattaaaatc 237  Q
     ||||||||||||||||    
T  49284173 tatatttgattaaaatc 49284189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 42739582 - 42739696
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| ||||| | || |||||| |    
T  42739582 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctccccttgtgaaccaaacata 42739681  T
Q  223 tatttgattaaaatc 237  Q
    |||||||||||||||    
T  42739682 tatttgattaaaatc 42739696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 1921336 - 1921220
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  1921336 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaattttgttttaaaatccctcccctaccctcgtgaaccaaaca 1921237  T
Q  221 catatttgattaaaatc 237  Q
     ||||||||||||||||    
T  1921236 tatatttgattaaaatc 1921220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 47497690 - 47497567
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 221  Q
    ||||||||||| | |||||||| | || ||||||||| ||||||||| |||||||||||||||| ||||||||| || ||| ||||| | || ||||||     
T  47497690 aagtgaataattttaaaatcataagatagttttaaggattagagggataaaaaagtaatttggtgttaaaatccttcacctccccttgtgaaccaaacat 47497591  T
Q  222 atatttgattaaaatctcttccct 245  Q
    | |||| |||||||||||| ||||    
T  47497590 acatttaattaaaatctctcccct 47497567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 29191258 - 29191204
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29191258 tagattattttagaagtgctttaatatttatgaatacctaatattttgttagaac 29191204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 54976019 - 54975965
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  54976019 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaac 54975965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 22443731 - 22443847
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  | ||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  22443731 tgaagtgaataatttaaaaattgtaatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 22443830  T
Q  221 catatttgattaaaatc 237  Q
     ||||||||||||||||    
T  22443831 tatatttgattaaaatc 22443847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 41279317 - 41279202
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 219  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| ||||||| | ||||||| ||  ||| ||||| | || ||||     
T  41279317 tgaagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaaagcaatttgg-tataaaatctcttccctccccttgtgaaccaaat 41279219  T
Q  220 acatatttgattaaaat 236  Q
    |||||||| ||||||||    
T  41279218 acatatttaattaaaat 41279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 38024414 - 38024465
Alignment:
Q  10 attattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  38024414 attattttagaagtgctctaatatttatgaatacctaatattttattagaac 38024465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 8067268 - 8067199
Alignment:
Q  135 taaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctcctt 203  Q
    |||||||||||||||||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||||    
T  8067268 taaaaatcatgatattgttttaagattaaagggataaaaaaagtaacttggatttaaaatccctctcctt 8067199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 6884912 - 6884958
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6884912 tagattattttagaagtgctctaatatttatgaatacttaatatttt 6884958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 37564027 - 37563973
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 61  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||| |||||||    
T  37564027 tagattattttagaaacgctctaatatttatgaatacctaatattttattagaac 37563973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 245
Target Start/End: Original strand, 39593207 - 39593329
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 221  Q
    ||||| ||||| | |||||||||| || ||||||||| ||||| ||| ||||| |||||||||| |||||| ||||| ||| ||||| | || ||||||     
T  39593207 aagtggataattttaaaatcatgagatagttttaaggattagaaggataaaaaggtaatttggtgttaaaa-ccctcacctccccttctgaaccaaacat 39593305  T
Q  222 atatttgattaaaatctcttccct 245  Q
    | |||| |||||||||||| ||||    
T  39593306 acatttaattaaaatctctcccct 39593329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 55873804 - 55873758
Alignment:
Q  7 tagattattctagaagtgctctaatatttatgaatacctaatatttt 53  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||    
T  55873804 tagattatcttagaagtgctataatatttatgaatacctaatatttt 55873758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 28174 - 28057
Alignment:
Q  123 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 222  Q
    ||||||||||  |||||||||||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  28174 aagtgaataagttaaaaatcatgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 28075  T
Q  223 tatttgattaaaatctct 240  Q
    ||||||||||||||||||    
T  28074 tatttgattaaaatctct 28057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 46485484 - 46485600
Alignment:
Q  121 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 220  Q
    ||||||||||||| |||||||  || || ||||||||  ||||||||| ||||||||||||| ||||||||||||||  ||| ||||| | || ||||||    
T  46485484 tgaagtgaataatttaaaaattgtgttactgttttaatattagagggataaaaaagtaatttagttttaaaatccctgccctccccttgtgaaccaaaca 46485583  T
Q  221 catatttgattaaaatc 237  Q
      |||||||||||||||    
T  46485584 tgtatttgattaaaatc 46485600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 7311490 - 7311392
Alignment:
Q  137 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttgattaaaat 236  Q
    |||||||||| ||||||||||| ||||||||| ||||   ||||||| |||||||||| |||  || ||||| || | |||||| |||||| ||||||||    
T  7311490 aaaatcatgagattgttttaagattagagggataaaa---taatttgattttaaaatctctcgtctccccttctacaccaaacatatatttaattaaaat 7311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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