View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_36 (Length: 249)
Name: NF7617_low_36
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3642157 - 3642395
Alignment:
| Q |
1 |
tgcataattgttatacaagtcgtcaatgacaattcattcaagaatatcatcagtgccaaagttaacatgaccaggatattgatgcgaataaactaaccaa |
100 |
Q |
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| T |
3642157 |
tgcataattgttatacaagtcgtcaatgacaattcattcaagaatatcatcagtgccaaagttaacatgaccaggatattgatgcgaataaactaaccaa |
3642256 |
T |
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| Q |
101 |
ggcagctgaaattagatgaacaaatgctacactagacaatggttccgattttccttgttgaaacttctctggcagtcaatactttaaaatttgagacaac |
200 |
Q |
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| T |
3642257 |
ggcagctgaaattagatgaacaaatgctacactagacaatggttccgattttccttgttgaaacttctccggcagtcaatactttaaaatttgagacaac |
3642356 |
T |
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| Q |
201 |
aaatgaatcttgagacgatcataaagttagcagcttcat |
239 |
Q |
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| T |
3642357 |
aaatgaatcttgagacgatcataaagttagcagcttcat |
3642395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 9806801 - 9806860
Alignment:
| Q |
180 |
tactttaaaatttgagacaacaaatgaatcttgagacgatcataaagttagcagcttcat |
239 |
Q |
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| T |
9806801 |
tactttataatttgagacaacaaatgaatcttgagataatcataaggttaacagcttcat |
9806860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 10606935 - 10606872
Alignment:
| Q |
47 |
tcatcagtgccaaagttaacatgaccaggatattgatgcgaataaactaaccaaggcagctgaa |
110 |
Q |
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| T |
10606935 |
tcatcagtgccagagttaaaaggacctggatattaattggaataaactaaacaaggcagctgaa |
10606872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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