View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7617_low_37 (Length: 248)
Name: NF7617_low_37
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_37 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 20186965 - 20187047
Alignment:
| Q |
154 |
gtgaactttttcaatttttgatcaagtttgagtataattaaaaagcttaagaagaaagtgaaaaggacgtactttgtgatgat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20186965 |
gtgaactttttcaatttttgatcaagtttgagtataattaaaaagcttaagaagaaagtgaaaaggacgtactttgggatgat |
20187047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 20206034 - 20206116
Alignment:
| Q |
154 |
gtgaactttttcaatttttgatcaagtttgagtataattaaaaagcttaagaagaaagtgaaaaggacgtactttgtgatgat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20206034 |
gtgaactttttcaatttttgatcaagtttgagtataattaaaaagcttaagaagaaagtgaaaaggacgtactttgggatgat |
20206116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 20186825 - 20186902
Alignment:
| Q |
18 |
catcactggtgaatacaatttcactgcgttcgttgaaagtgaaaccgccattgaactccaatcatcccttccattcac |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20186825 |
catcactggtgaatacaatttcactgcgttcgttgaaagtgaaaccgccattgaactccaatcatcccttccattcac |
20186902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 20205892 - 20205969
Alignment:
| Q |
18 |
catcactggtgaatacaatttcactgcgttcgttgaaagtgaaaccgccattgaactccaatcatcccttccattcac |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205892 |
catcactggtgaatacaatttcactgcgttcgttgaaagtgaaaccgccattgaactccaatcatcccttccattcac |
20205969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 44290546 - 44290628
Alignment:
| Q |
154 |
gtgaactttttcaatttttgatcaagtttgagtataattaaaaagcttaagaagaaagtgaaaaggacgtactttgtgatgat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44290546 |
gtgaactttttcaatttttgatcaagtttgagtataattaaaaagcttaagaagaaagtgaaaaggacgtactttgggatgat |
44290628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 44290404 - 44290481
Alignment:
| Q |
18 |
catcactggtgaatacaatttcactgcgttcgttgaaagtgaaaccgccattgaactccaatcatcccttccattcac |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44290404 |
catcactggtgaatacaatttcactgcgttcgttgaaagtgaaaccgccattgaactccaatcatcccttccattcac |
44290481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University